JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TPTE_chr21_10516583_10610716	0/0	a0014	551	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0015	551	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0016	551	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	1/0	a0017	551	1	0	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0018	551	1	1	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0019	551	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0020	551	1	1	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPX2_chr20_31734290_31806800	1/1	a0001	747	263	85	68	62	16	30	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	a0002	747	3	0	0	3	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	a0003	747	1	1	0	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	a0004	747	1	0	0	1	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	a0005	747	1	0	1	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	a0006	747	1	0	1	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TRA2A_chr7_23499780_23536981	1/0	a0001	282	399	86	74	188	14	36	copy fasta	TRA2A	chr7	23499780	23536981
TRA2B_chr3_185909558_185943014	1/1	a0001	288	434	92	78	204	16	42	copy fasta	TRA2B	chr3	185909558	185943014
TRABD2A_chr2_84816666_84886084	1/1	a0001	505	171	58	36	51	2	22	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2A_chr2_84816666_84886084	0/0	a0002	505	47	18	13	10	3	3	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2A_chr2_84816666_84886084	0/0	a0003	505	10	3	5	1	0	1	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2A_chr2_84816666_84886084	0/0	a0004	505	7	0	2	0	1	4	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2A_chr2_84816666_84886084	0/0	a0005	505	1	0	0	1	0	0	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2A_chr2_84816666_84886084	0/0	a0006	505	1	0	0	1	0	0	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2A_chr2_84816666_84886084	0/0	a0007	505	1	1	0	0	0	0	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2B_chr1_47755528_48002385	1/1	a0001	517	214	68	40	67	11	26	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	a0002	517	27	14	5	5	1	2	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	a0003	517	2	2	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	a0004	517	1	0	1	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD_chr22_50180913_50204595	1/1	a0001	376	429	92	82	189	18	46	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	a0002	376	1	0	0	1	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRADD_chr16_67149185_67164909	1/1	a0001	312	272	91	52	80	9	38	copy fasta	TRADD	chr16	67149185	67164909
TRADD_chr16_67149185_67164909	0/0	a0002	312	3	3	0	0	0	0	copy fasta	TRADD	chr16	67149185	67164909
TRADD_chr16_67149185_67164909	0/0	a0003	312	1	0	0	1	0	0	copy fasta	TRADD	chr16	67149185	67164909
TRADD_chr16_67149185_67164909	0/0	a0004	312	1	0	0	0	1	0	copy fasta	TRADD	chr16	67149185	67164909
TRADD_chr16_67149185_67164909	0/0	a0005	312	1	0	0	1	0	0	copy fasta	TRADD	chr16	67149185	67164909
TRAF1_chr9_120897393_120931796	1/1	a0001	416	357	93	59	159	15	29	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	a0002	416	5	0	4	0	0	1	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	a0003	416	1	1	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	a0004	416	1	0	0	1	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	a0005	416	1	0	0	0	1	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	a0006	416	1	0	1	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF2_chr9_136881516_136931607	1/1	a0001	501	306	87	79	94	12	32	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	a0002	501	2	0	1	0	0	1	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	a0003	501	1	1	0	0	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	a0004	501	1	0	0	0	0	1	copy fasta	TRAF2	chr9	136881516	136931607
TRAF3IP1_chr2_238315518_238405897	1/0	a0001	691	179	41	25	83	4	25	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	a0002	691	69	2	20	40	1	6	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	a0003	691	53	25	7	16	2	3	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	a0004	691	12	11	1	0	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/1	a0005	691	10	0	2	7	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	a0006	660	7	4	1	0	1	1	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	a0007	654	2	0	0	0	0	2	copy fasta	TRAF3IP1	chr2	238315518	238405897