JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRAF3IP1_chr2_238315518_238405897	0/0	a0008	691	2	2	0	0	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	a0009	691	1	0	0	0	0	1	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	a0010	691	1	1	0	0	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	a0011	691	1	1	0	0	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	a0012	691	1	1	0	0	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP2_chr6_111550381_111610878	0/0	a0001	565	260	62	36	119	13	30	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	a0002	565	21	9	7	3	1	1	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	1/1	a0003	565	15	2	8	0	0	3	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	a0004	565	11	5	3	0	0	3	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	a0005	566	3	0	0	3	0	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	a0006	565	1	1	0	0	0	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	a0007	565	1	1	0	0	0	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	a0008	565	1	0	0	0	0	1	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	a0009	565	1	0	1	0	0	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	a0010	565	1	0	1	0	0	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	a0011	565	1	0	0	1	0	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP3_chr1_209751053_209787310	0/0	a0001	551	353	68	58	181	13	33	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	1/1	a0002	551	70	14	11	32	5	6	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	a0003	551	7	7	0	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	a0004	551	6	4	2	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	a0005	551	1	1	0	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	a0006	551	1	0	1	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	a0007	551	1	0	1	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	a0008	551	1	1	0	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	a0009	551	1	0	0	0	0	1	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	a0010	551	1	0	1	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	a0011	551	1	0	0	1	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	a0012	551	1	1	0	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3_chr14_102772449_102916500	0/0	a0001	568	172	73	33	49	6	11	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	1/1	a0002	568	124	7	31	63	4	17	copy fasta	TRAF3	chr14	102772449	102916500
TRAF4_chr17_28739011_28755956	1/1	a0001	470	377	89	66	171	10	39	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	a0002	470	1	1	0	0	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	a0003	470	1	0	0	0	0	1	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	a0004	470	1	0	0	1	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF5_chr1_211321833_211379946	1/1	a0001	557	313	84	54	124	12	37	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	a0002	557	3	0	0	3	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	a0003	557	3	3	0	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	a0004	557	2	0	0	0	0	2	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	a0005	557	1	1	0	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	a0006	557	1	0	0	0	0	1	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	a0007	557	1	0	0	1	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF6_chr11_36478769_36515272	1/1	a0001	522	386	96	79	155	14	40	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	a0002	522	1	0	0	1	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	a0003	522	1	0	1	0	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF7_chr16_2150782_2183129	1/1	a0001	670	315	94	63	100	14	42	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	a0002	670	4	0	0	4	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	a0003	670	1	0	1	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAFD1_chr12_112120560_112158604	1/1	a0001	582	337	84	54	162	6	29	copy fasta	TRAFD1	chr12	112120560	112158604
TRAFD1_chr12_112120560_112158604	0/0	a0002	582	4	1	2	0	0	1	copy fasta	TRAFD1	chr12	112120560	112158604
TRAFD1_chr12_112120560_112158604	0/0	a0003	582	3	3	0	0	0	0	copy fasta	TRAFD1	chr12	112120560	112158604