JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRAFD1_chr12_112120560_112158604	0/0	a0004	270	1	1	0	0	0	0	copy fasta	TRAFD1	chr12	112120560	112158604
TRAFD1_chr12_112120560_112158604	0/0	a0005	582	1	1	0	0	0	0	copy fasta	TRAFD1	chr12	112120560	112158604
TRAIP_chr3_49823601_49861564	1/1	a0001	469	294	88	58	94	14	38	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/0	a0002	469	1	0	0	1	0	0	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/0	a0003	469	1	0	0	1	0	0	copy fasta	TRAIP	chr3	49823601	49861564
TRAK1_chr3_42086357_42230890	1/1	a0001	953	269	80	47	91	14	35	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	a0002	953	6	4	2	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	a0003	953	3	2	1	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	a0004	953	3	3	0	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	a0005	953	2	2	0	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	a0006	953	1	0	1	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	a0007	953	1	0	1	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	a0008	953	1	0	0	0	0	1	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	a0009	953	1	0	0	1	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	a0010	953	1	1	0	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK2_chr2_201372207_201456458	0/1	a0001	914	140	20	27	60	7	25	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	1/0	a0002	914	108	37	3	59	0	8	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	a0003	914	99	18	28	47	4	2	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	a0004	914	15	11	3	0	1	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	a0005	914	2	2	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	a0006	914	2	2	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	a0007	914	2	2	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	a0008	914	1	1	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	a0009	914	1	0	0	0	0	1	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	a0010	914	1	0	1	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	a0011	914	1	1	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAM1L1_chr4_117078554_117090576	1/1	a0001	369	433	97	70	202	17	45	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	a0002	369	1	0	0	0	0	1	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	a0003	369	1	1	0	0	0	0	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	a0004	369	1	0	0	0	1	0	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1_chr8_70568218_70613416	1/1	a0001	374	321	80	62	131	12	34	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	a0002	374	6	6	0	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	a0003	374	1	0	0	1	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	a0004	374	1	1	0	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	a0005	374	1	1	0	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM2_chr6_52492408_52582060	1/1	a0001	370	377	90	72	154	16	43	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	a0002	370	1	0	0	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRANK1_chr3_36821819_36950054	1/1	a0001	2969	227	73	56	72	8	16	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0002	2969	81	4	11	56	3	7	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0003	2969	4	0	0	4	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0004	2969	3	3	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0005	2969	2	2	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0006	2969	2	2	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0007	2969	2	0	0	2	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0008	2969	1	0	1	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0009	2969	1	0	0	0	1	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0010	2969	1	0	0	0	0	1	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0011	2969	1	0	0	1	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0012	2969	1	0	0	1	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0013	2969	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054