JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BMP8B_chr1_39752182_39793865	0/0	a0003	402	32	0	8	19	2	3	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0004	402	26	0	1	21	1	3	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0005	402	19	18	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0006	402	11	0	0	11	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0007	402	9	0	0	9	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0008	402	2	2	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0009	402	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0010	402	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0011	402	1	0	0	0	0	1	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0012	402	1	0	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0013	402	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0014	402	1	0	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0015	402	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0016	402	1	0	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0017	402	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0018	402	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0019	402	1	0	0	0	0	1	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0020	402	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0021	402	1	0	0	0	0	1	copy fasta	BMP8B	chr1	39752182	39793865
BMPER_chr7_33900539_34161427	1/1	a0001	685	209	74	42	56	8	27	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	a0002	685	14	1	0	12	0	1	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	a0003	685	3	3	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	a0004	685	2	0	2	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	a0005	685	1	0	0	1	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	a0006	685	1	0	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	a0007	685	1	0	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	a0008	685	1	0	0	1	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPR1A_chr10_86751619_86932969	0/0	a0001	532	142	61	22	43	6	10	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	1/1	a0002	532	134	24	35	43	8	22	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	a0003	532	1	0	1	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	a0004	532	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1B_chr4_94752955_95163448	1/1	a0001	502	223	75	50	60	10	26	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	a0002	502	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	a0003	502	1	0	0	0	0	1	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	a0004	502	1	0	0	0	0	1	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR2_chr2_202371327_202572749	1/1	a0001	1038	218	72	51	58	8	27	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	a0002	1038	2	0	2	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	a0003	1038	1	0	1	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	a0004	1038	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	a0005	1038	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	a0006	1038	1	0	0	0	0	1	copy fasta	BMPR2	chr2	202371327	202572749
BMS1_chr10_42777795_42839937	1/0	a0001	1282	155	56	40	29	10	19	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/1	a0002	1282	82	17	22	35	1	6	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0003	1282	70	3	8	40	5	14	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0004	1282	31	0	0	31	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0005	1282	19	0	1	18	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0006	1282	3	0	0	3	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0007	1282	2	2	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0008	1282	2	1	1	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0009	1282	2	2	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937