JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRANK1_chr3_36821819_36950054	0/0	a0014	2969	1	0	0	1	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0015	2969	1	0	0	1	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	a0016	2969	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRAP1_chr16_3653037_3722524	1/1	a0001	704	208	80	32	81	6	7	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0002	704	139	6	27	77	4	25	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0003	704	26	0	6	9	1	10	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0004	704	10	0	1	8	0	1	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0005	704	6	0	6	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0006	703	4	0	0	4	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0007	704	3	0	1	0	1	1	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0008	704	3	0	3	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0009	704	2	0	0	0	0	2	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0010	704	2	0	0	2	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0011	704	2	2	0	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0012	129	1	0	0	1	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0013	704	1	0	0	1	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0014	704	1	1	0	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0015	704	1	1	0	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0016	704	1	0	0	1	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0017	704	1	1	0	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	a0018	704	1	1	0	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAPPC10_chr21_44007309_44111552	0/0	a0001	1259	126	55	18	37	3	13	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	1/1	a0002	1259	114	16	28	37	7	24	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	a0003	1259	8	4	3	0	0	1	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	a0004	1259	2	1	1	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	a0005	1259	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	a0006	1259	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	a0007	1259	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	a0008	1259	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC11_chr4_183654293_183718589	1/1	a0001	1133	300	84	55	126	13	20	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0002	1133	48	3	3	37	1	4	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0003	1133	33	4	5	21	1	2	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0004	1133	17	0	5	9	1	2	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0005	1133	3	0	0	3	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0006	1133	3	3	0	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0007	1133	3	0	0	3	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0008	1133	2	0	0	0	0	2	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0009	1133	2	0	0	2	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0010	1133	1	0	0	0	0	1	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0011	1133	1	0	0	1	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0012	1133	1	0	0	1	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0013	1133	1	0	0	1	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0014	1133	1	0	0	0	0	1	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0015	1133	1	1	0	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0016	1133	1	0	0	0	0	1	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0017	1133	1	1	0	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	a0018	1133	1	0	0	0	0	1	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC12_chr2_3374694_3484565	1/1	a0001	735	175	56	29	60	8	20	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	a0002	735	154	35	27	69	5	18	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	a0003	735	4	0	1	3	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565