JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRAPPC12_chr2_3374694_3484565	0/0	a0004	735	2	2	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	a0005	735	1	0	0	1	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	a0006	735	1	0	0	1	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	a0007	735	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	a0008	735	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	a0009	735	1	0	1	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	a0010	735	1	0	1	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	a0011	735	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	a0012	735	1	0	1	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	a0013	735	1	0	0	0	1	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC13_chr5_65620027_65671233	1/1	a0001	417	362	94	70	146	14	36	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	a0002	417	1	1	0	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	a0003	171	1	0	1	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	a0004	417	1	0	1	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	a0005	417	1	1	0	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC14_chr7_100149423_100163723	1/1	a0001	580	403	80	68	192	16	45	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	a0002	580	1	0	0	0	0	1	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	a0003	580	1	0	0	1	0	0	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	a0004	580	1	0	0	1	0	0	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC1_chr17_7925349_7936946	1/1	a0001	145	430	98	76	198	16	40	copy fasta	TRAPPC1	chr17	7925349	7936946
TRAPPC2B_chr19_57358551_57370405	1/1	a0001	140	403	91	66	188	16	40	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2B_chr19_57358551_57370405	0/0	a0002	140	4	0	0	4	0	0	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2B_chr19_57358551_57370405	0/0	a0003	140	2	0	0	0	0	2	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2B_chr19_57358551_57370405	0/0	a0004	140	1	1	0	0	0	0	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2L_chr16_88852127_88867678	1/1	a0001	139	441	94	82	195	18	50	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	a0002	142	7	5	2	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	a0003	139	1	0	0	1	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	a0004	139	1	1	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2_chrX_13707245_13739620	1/1	a0001	140	325	72	58	156	11	26	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	a0002	140	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC3L_chr6_116489989_116550684	1/1	a0001	181	355	84	56	160	16	37	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	a0002	181	3	0	2	0	0	1	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	a0003	181	1	0	0	1	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	a0004	181	1	0	0	1	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3_chr1_36131572_36154486	1/1	a0001	180	400	84	76	192	10	36	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC4_chr11_119013766_119029134	1/1	a0001	219	388	98	74	158	16	40	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC5_chr19_7675833_7692703	1/1	a0001	188	299	42	61	153	11	30	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	a0002	188	155	56	21	53	7	18	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC6A_chr19_45157933_45183237	1/1	a0001	159	429	99	80	193	14	41	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	a0002	159	2	0	0	2	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	a0003	159	1	1	0	0	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	a0004	159	1	0	0	0	0	1	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	a0005	159	1	0	0	1	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6B_chr14_39142814_39175333	1/1	a0001	158	429	94	79	196	18	40	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	a0002	158	1	0	1	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC8_chr18_31824197_31948128	0/1	a0001	1435	172	47	35	61	12	16	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	a0002	1435	148	25	21	78	4	20	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	a0003	1435	9	8	1	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	a0004	1435	5	5	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	a0005	1435	4	4	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128