JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRAPPC8_chr18_31824197_31948128	0/0	a0006	1435	2	0	0	2	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	1/0	a0007	1435	1	0	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	a0008	1435	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	a0009	1435	1	0	0	1	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	a0010	1435	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	a0011	1435	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	a0012	1435	1	0	1	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	a0013	1435	1	0	0	1	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	a0014	1435	1	0	1	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	a0015	1435	1	0	1	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	a0016	1435	1	0	0	1	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC9_chr8_139722725_140462744	1/1	a0001	1148	92	49	31	2	2	6	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	a0002	1148	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	a0003	1148	1	0	1	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	a0004	1148	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	a0005	1148	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	a0006	1148	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	a0007	1148	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRARG1_chr17_1274662_1305978	0/0	a0001	177	275	64	60	113	10	28	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	1/0	a0002	177	43	8	8	15	2	9	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	a0003	177	35	19	5	4	2	5	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	a0004	177	30	4	3	22	0	1	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	a0005	177	5	0	3	0	0	2	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/1	a0006	177	4	0	1	0	0	2	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	a0007	177	3	0	1	1	0	1	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	a0008	177	2	0	2	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	a0009	177	2	0	0	2	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	a0010	177	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	a0011	177	1	0	1	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	a0012	177	1	0	0	1	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRAT1_chr3_108817786_108860005	1/1	a0001	186	314	80	72	100	14	46	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	a0002	186	9	9	0	0	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	a0003	186	5	0	0	5	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	a0004	186	4	4	0	0	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	a0005	186	3	3	0	0	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	a0006	186	3	0	0	3	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	a0007	186	1	0	0	1	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	a0008	186	1	0	0	1	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRDMT1_chr10_17132336_17206672	1/1	a0001	391	222	53	35	109	7	16	copy fasta	TRDMT1	chr10	17132336	17206672
TRDMT1_chr10_17132336_17206672	0/0	a0002	391	152	37	35	55	7	18	copy fasta	TRDMT1	chr10	17132336	17206672
TRDMT1_chr10_17132336_17206672	0/0	a0003	391	4	2	2	0	0	0	copy fasta	TRDMT1	chr10	17132336	17206672
TRDN_chr6_123211339_123641950	0/0	a0001	729	51	11	13	19	3	5	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0002	729	21	9	6	1	0	5	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0003	729	11	11	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0004	729	7	6	0	0	0	1	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0005	729	7	4	2	1	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0006	729	6	0	2	2	1	1	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0007	729	6	6	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0008	727	6	0	0	6	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/1	a0009	729	5	2	0	2	0	0	copy fasta	TRDN	chr6	123211339	123641950