JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRDN_chr6_123211339_123641950	0/0	a0010	729	4	1	0	0	0	3	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0011	729	3	3	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0012	729	3	0	2	1	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0013	729	2	1	1	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	1/0	a0014	729	2	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0015	729	2	2	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0016	727	1	0	0	1	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0017	729	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0018	729	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0019	729	1	0	0	0	0	1	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0020	729	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0021	729	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0022	729	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0023	729	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0024	729	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0025	729	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0026	729	1	0	0	0	0	1	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0027	729	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0028	729	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0029	729	1	0	0	1	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0030	729	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	a0031	729	1	0	0	0	0	1	copy fasta	TRDN	chr6	123211339	123641950
TREH_chr11_118652316_118684650	1/1	a0001	583	225	83	49	54	12	25	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0002	583	74	0	5	63	0	6	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0003	583	65	2	15	36	2	10	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0004	583	5	0	0	5	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0005	583	4	0	0	4	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0006	583	3	3	0	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0007	583	3	0	0	3	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0008	583	2	0	0	2	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0009	583	2	0	0	2	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0010	583	2	0	2	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0011	583	1	0	1	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0012	583	1	0	0	0	0	1	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0013	583	1	0	0	1	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0014	583	1	0	0	0	0	1	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0015	583	1	1	0	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0016	583	1	0	0	0	0	1	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	a0017	583	1	1	0	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREM1_chr6_41268605_41291682	1/1	a0001	234	314	66	65	130	14	37	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	a0002	234	97	15	11	64	4	3	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	a0003	234	12	12	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	a0004	234	3	3	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM2_chr6_41153508_41168116	1/1	a0001	230	300	79	58	113	13	35	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	a0002	230	16	16	0	0	0	0	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	a0003	230	3	0	1	0	0	2	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	a0004	230	1	0	0	0	1	0	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	a0005	230	1	0	0	1	0	0	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	a0006	230	1	0	0	0	0	1	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	a0007	230	1	0	1	0	0	0	copy fasta	TREM2	chr6	41153508	41168116