JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TREM2_chr6_41153508_41168116	0/0	a0008	230	1	1	0	0	0	0	copy fasta	TREM2	chr6	41153508	41168116
TREML1_chr6_41144337_41159347	1/1	a0001	311	273	80	53	91	12	35	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	a0002	311	12	12	0	0	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	a0003	311	3	3	0	0	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	a0004	311	1	1	0	0	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	a0005	311	1	0	0	1	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	a0006	311	1	0	1	0	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	a0007	311	1	0	0	0	0	1	copy fasta	TREML1	chr6	41144337	41159347
TREML2_chr6_41184749_41206149	1/1	a0001	321	262	74	33	122	10	21	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	a0002	321	141	19	29	70	5	18	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	a0003	321	30	0	9	16	1	4	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	a0004	321	8	6	2	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	a0005	321	7	0	3	1	0	3	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	a0006	321	2	0	2	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	a0007	321	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	a0008	321	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	a0009	321	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	a0010	321	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML4_chr6_41223349_41243882	0/1	a0001	200	297	23	60	167	14	32	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	1/0	a0002	200	97	51	13	25	4	3	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	a0003	200	16	15	1	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	a0004	200	9	0	1	1	0	7	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	a0005	200	6	0	0	6	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	a0006	200	1	0	0	1	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	a0007	200	1	0	1	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	a0008	200	1	1	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TRERF1_chr6_42219931_42456926	1/1	a0001	1212	140	50	18	49	4	17	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0002	1213	11	10	1	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0003	1212	10	0	2	7	0	1	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0004	1212	4	4	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0005	1212	2	2	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0006	1212	2	1	1	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0007	1213	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0008	1212	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0009	1212	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0010	1213	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0011	1212	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0012	1212	1	0	0	1	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0013	1212	1	0	0	1	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0014	1212	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0015	1212	1	0	0	0	0	1	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0016	1208	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	a0017	1212	1	0	0	0	0	1	copy fasta	TRERF1	chr6	42219931	42456926
TREX1_chr3_48461230_48472645	1/1	a0001	314	369	80	66	161	16	44	copy fasta	TREX1	chr3	48461230	48472645
TREX1_chr3_48461230_48472645	0/0	a0002	314	1	0	0	1	0	0	copy fasta	TREX1	chr3	48461230	48472645
TREX2_chrX_153439473_153451056	1/1	a0001	236	331	79	59	150	10	31	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	a0002	236	2	0	0	2	0	0	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	a0003	82	1	0	0	1	0	0	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	a0004	236	1	1	0	0	0	0	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	a0005	236	1	0	1	0	0	0	copy fasta	TREX2	chrX	153439473	153451056