JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TREX2_chrX_153439473_153451056	0/0	a0006	50	1	0	0	0	0	1	copy fasta	TREX2	chrX	153439473	153451056
TRHDE_chr12_72267370_72675758	0/1	a0001	1069	88	30	21	28	6	2	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	a0002	1070	44	25	9	3	2	5	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	1/0	a0003	1069	21	12	1	2	2	3	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	a0004	1068	2	2	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	a0005	1070	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	a0006	1069	1	0	0	1	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	a0007	1069	1	0	1	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHR_chr8_109081585_109126565	1/1	a0001	398	375	94	67	152	16	44	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	a0002	398	1	0	1	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	a0003	398	1	0	0	1	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	a0004	93	1	0	0	1	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRH_chr3_129969720_129982935	1/1	a0001	242	295	61	47	129	17	39	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	a0002	242	111	19	27	60	1	4	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	a0003	242	4	4	0	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	a0004	242	2	2	0	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	a0005	242	1	1	0	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	a0006	242	1	0	0	0	0	1	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	a0007	242	1	1	0	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	a0008	242	1	0	0	1	0	0	copy fasta	TRH	chr3	129969720	129982935
TRIAP1_chr12_120438964_120451384	1/1	a0001	76	418	96	70	194	16	40	copy fasta	TRIAP1	chr12	120438964	120451384
TRIB1_chr8_125425358_125443403	1/1	a0001	372	457	86	81	223	18	47	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	a0002	372	14	12	2	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	a0003	372	1	0	0	0	0	1	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	a0004	372	1	0	0	1	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	a0005	372	1	0	0	1	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	a0006	372	1	0	0	1	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	a0007	372	1	0	1	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB2_chr2_12711936_12747734	1/1	a0001	343	384	96	71	165	10	40	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	a0002	343	3	0	3	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	a0003	343	1	0	0	1	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB3_chr20_375760_402559	1/1	a0001	358	345	75	71	158	13	26	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	a0002	358	91	12	5	52	2	20	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	a0003	358	5	0	2	1	0	2	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	a0004	358	2	2	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	a0005	358	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	a0006	358	1	1	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	a0007	358	1	1	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	a0008	358	1	0	0	0	1	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	a0009	358	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	a0010	358	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	a0011	358	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	a0012	358	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	a0013	358	1	1	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIL_chr7_28948358_28963330	0/1	a0001	811	181	64	32	53	10	21	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	a0002	811	153	21	26	93	2	11	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	1/0	a0003	811	76	6	16	39	4	10	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	a0004	811	4	0	0	0	0	4	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	a0005	811	3	0	0	3	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	a0006	811	1	1	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330