JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIL_chr7_28948358_28963330	0/0	a0007	811	1	0	0	1	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	a0008	811	1	0	0	1	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	a0009	811	1	1	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	a0010	811	1	1	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIM10_chr6_30146943_30166211	0/1	a0001	481	415	68	67	221	17	41	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	a0002	481	33	19	12	0	1	1	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	a0003	481	8	0	3	0	0	5	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	a0004	481	5	5	0	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	a0005	481	1	0	0	0	0	1	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	a0006	481	1	0	0	1	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	a0007	481	1	1	0	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	a0008	481	1	1	0	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM11_chr1_228388676_228411835	1/1	a0001	468	383	98	66	163	14	40	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	a0002	468	2	2	0	0	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	a0003	468	1	0	0	1	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM13_chr13_49992042_50023467	1/1	a0001	407	376	87	62	161	16	48	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	a0002	407	11	7	4	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	a0003	407	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	a0004	407	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	a0005	407	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM14_chr9_98079353_98124222	1/1	a0001	442	337	63	59	161	14	38	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	a0002	442	12	11	1	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	a0003	442	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	a0004	442	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	a0005	442	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM15_chr6_30158546_30177693	0/1	a0001	465	283	85	49	115	10	23	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	a0002	465	86	0	6	63	3	14	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	a0003	465	65	5	19	35	3	3	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	a0004	465	15	6	3	0	0	6	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	a0005	465	4	0	3	0	0	1	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	a0006	465	1	1	0	0	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	a0007	465	1	0	0	0	0	1	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	a0008	465	1	0	0	1	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	a0009	395	1	1	0	0	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	a0010	465	1	0	1	0	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	a0011	465	1	0	1	0	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	a0012	465	1	0	0	1	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	a0013	16	1	0	0	1	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM16_chr17_15622966_15689311	1/1	a0001	564	186	37	46	86	2	13	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	a0002	564	106	21	17	52	3	13	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	a0003	564	28	26	2	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	a0004	564	20	0	1	14	0	5	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	a0005	564	5	1	2	2	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	a0006	564	5	4	0	0	0	1	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	a0007	564	3	3	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	a0008	47	2	0	0	2	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	a0009	564	2	2	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	a0010	564	1	0	1	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	a0011	564	1	0	1	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	a0012	564	1	0	0	0	1	0	copy fasta	TRIM16	chr17	15622966	15689311