JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIM17_chr1_228402935_228421861	1/1	a0001	477	398	93	66	183	14	40	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	a0002	477	4	4	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	a0003	477	3	0	3	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	a0004	477	1	0	0	1	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	a0005	477	1	1	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	a0006	477	1	1	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	a0007	477	1	0	0	1	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	a0008	477	1	1	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	a0009	477	1	0	1	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	a0010	286	1	0	0	1	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM21_chr11_4379897_4398702	1/1	a0001	475	474	93	83	228	18	50	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	a0002	475	2	2	0	0	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	a0003	475	2	1	1	0	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM22_chr11_5684790_5715863	1/0	a0001	498	211	32	23	144	2	9	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0002	498	73	7	17	32	8	9	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/1	a0003	498	72	19	26	6	4	16	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0004	498	66	14	14	22	2	14	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0005	498	18	0	0	18	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0006	498	6	6	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0007	498	6	6	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0008	498	4	0	0	4	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0009	498	3	0	0	3	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0010	498	3	3	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0011	498	3	3	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0012	498	2	2	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0013	454	2	1	1	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0014	498	2	0	1	0	1	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0015	498	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0016	498	1	0	0	1	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0017	498	1	0	0	0	1	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0018	498	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0019	498	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0020	498	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0021	498	1	0	1	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0022	498	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	a0023	498	1	0	1	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM23_chr5_65584690_65629333	1/1	a0001	574	367	91	70	148	16	40	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	a0002	574	5	5	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM24_chr7_138455259_138594996	1/1	a0001	1050	310	80	56	122	8	42	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	a0002	1050	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	a0003	1050	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM25_chr17_56882909_56919049	0/0	a0001	630	263	68	45	101	13	36	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	1/1	a0002	630	96	10	27	44	2	11	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	a0003	630	12	12	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	a0004	630	6	0	0	6	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	a0005	630	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	a0006	630	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	a0007	630	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	a0008	630	1	0	0	0	1	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	a0009	630	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049