JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIM25_chr17_56882909_56919049	0/0	a0010	630	1	0	0	1	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	a0011	73	1	0	0	0	0	1	copy fasta	TRIM25	chr17	56882909	56919049
TRIM26_chr6_30179455_30218406	0/1	a0001	539	410	96	74	183	15	41	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	a0002	539	22	0	6	15	0	1	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	a0003	539	7	0	0	1	0	6	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	a0004	539	1	0	0	1	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	a0005	539	1	0	0	0	1	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM27_chr6_28898002_28928985	0/1	a0001	513	408	95	70	182	16	44	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	a0002	513	1	1	0	0	0	0	copy fasta	TRIM27	chr6	28898002	28928985
TRIM28_chr19_58539064_58555715	1/1	a0001	835	401	94	72	175	18	40	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	a0002	835	1	0	0	1	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM29_chr11_120106286_120143113	1/1	a0001	588	365	95	68	141	14	45	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	a0002	588	31	0	4	26	0	1	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	a0003	588	1	0	1	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	a0004	575	1	0	1	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	a0005	588	1	1	0	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	a0006	588	1	0	0	1	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM2_chr4_153199443_153344317	1/1	a0001	771	266	84	50	84	12	34	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	a0002	771	2	2	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM31_chr6_30097897_30118090	0/0	a0001	425	287	49	60	150	7	21	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/1	a0002	425	57	31	6	10	1	8	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	a0003	425	39	2	12	16	2	7	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	a0004	425	24	1	2	14	6	1	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	a0005	425	13	1	1	9	0	2	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	a0006	425	7	0	0	1	0	6	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	a0007	425	5	0	1	0	1	3	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	a0008	425	4	3	1	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	a0009	425	4	4	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	a0010	425	1	0	0	1	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	a0011	425	1	1	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	a0012	425	1	0	0	0	1	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	a0013	425	1	0	0	1	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	a0014	425	1	0	1	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM32_chr9_116682305_116706299	1/1	a0001	653	441	94	75	217	14	39	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	a0002	653	6	0	0	6	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	a0003	653	1	0	0	0	0	1	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	a0004	653	1	0	0	1	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	a0005	653	1	0	1	0	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM33_chr1_114387790_114516203	0/1	a0001	1127	168	61	40	31	6	29	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	1/0	a0002	1127	28	1	12	14	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	a0003	1127	10	8	0	1	0	1	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	a0004	1127	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	a0005	1127	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM34_chr11_5620001_5649398	1/1	a0001	488	358	76	62	164	13	41	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	a0002	488	30	1	10	19	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	a0003	488	29	12	5	4	3	5	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	a0004	488	3	3	0	0	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	a0005	488	2	0	0	0	0	2	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	a0006	488	1	1	0	0	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	a0007	488	1	1	0	0	0	0	copy fasta	TRIM34	chr11	5620001	5649398