JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIM34_chr11_5620001_5649398	0/0	a0008	488	1	0	1	0	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	a0009	146	1	0	0	1	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM35_chr8_27279886_27316272	1/1	a0001	493	407	94	83	172	12	44	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	a0002	493	2	0	0	0	2	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	a0003	493	1	0	0	1	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	a0004	493	1	0	0	1	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	a0005	493	1	0	1	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM36_chr5_115119772_115174908	0/1	a0001	716	263	64	52	106	16	24	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	a0002	716	91	10	14	60	0	7	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	1/0	a0003	716	41	17	3	19	1	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	a0004	716	6	0	0	6	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	a0005	716	2	0	1	0	1	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	a0006	716	1	0	0	1	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	a0007	716	1	0	0	1	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	a0008	716	1	0	0	1	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	a0009	716	1	0	0	0	0	1	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	a0010	716	1	1	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM37_chr17_58993202_59111880	1/1	a0001	964	333	85	64	139	12	31	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	a0002	964	5	4	1	0	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	a0003	964	1	0	1	0	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	a0004	964	1	1	0	0	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	a0005	964	1	0	0	1	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	a0006	964	1	0	0	0	0	1	copy fasta	TRIM37	chr17	58993202	59111880
TRIM38_chr6_25957802_25996231	1/1	a0001	465	329	81	71	118	16	41	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	a0002	163	14	0	0	14	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	a0003	465	13	12	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	a0004	465	5	5	0	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	a0005	465	2	0	2	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	a0006	465	1	0	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	a0007	465	1	0	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	a0008	465	1	0	0	0	0	1	copy fasta	TRIM38	chr6	25957802	25996231
TRIM39_chr6_30321927_30348729	0/1	a0001	488	457	91	84	219	18	44	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	a0002	488	2	0	0	0	0	2	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	a0003	488	1	1	0	0	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	a0004	488	1	0	0	1	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM3_chr11_6443613_6478941	1/1	a0001	744	377	90	80	138	18	49	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	a0002	744	1	0	0	1	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	a0003	744	1	0	0	1	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	a0004	744	1	0	0	1	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	a0005	744	1	1	0	0	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	a0006	744	1	0	0	1	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	a0007	744	1	0	0	0	0	1	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	a0008	744	1	1	0	0	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM40_chr6_30131140_30153728	0/1	a0001	258	380	81	60	186	14	38	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	a0002	258	56	5	16	30	3	2	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	a0003	258	9	0	3	0	0	6	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	a0004	258	8	7	1	0	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	a0005	258	2	1	0	0	0	1	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	a0006	258	2	0	0	0	1	1	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	a0007	258	2	0	0	2	0	0	copy fasta	TRIM40	chr6	30131140	30153728