JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BMS1_chr10_42777795_42839937	0/0	a0010	1282	2	1	1	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0011	1282	2	0	0	2	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0012	1282	2	2	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0013	1282	2	0	0	2	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0014	1282	1	0	1	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0015	1282	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0016	1282	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0017	1282	1	0	0	0	0	1	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0018	1282	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0019	1282	1	0	0	0	0	1	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0020	1282	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0021	1282	1	0	0	0	0	1	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0022	1282	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0023	1282	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0024	1282	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0025	1282	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0026	1282	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	a0027	1282	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMT2_chr7_112814147_112944875	1/1	a0001	405	206	90	46	34	8	26	copy fasta	BMT2	chr7	112814147	112944875
BMX_chrX_15495807_15561519	1/1	a0001	675	214	64	48	68	9	23	copy fasta	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	a0002	84	1	0	0	1	0	0	copy fasta	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	a0003	675	1	0	0	0	0	1	copy fasta	BMX	chrX	15495807	15561519
BNC1_chr15_83250884_83289664	1/1	a0001	994	289	86	58	103	10	30	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	a0002	994	3	3	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	a0003	994	2	0	0	2	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	a0004	994	2	1	1	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	a0005	994	2	0	0	2	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	a0006	994	1	1	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	a0007	994	1	1	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	a0008	994	1	0	1	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	a0009	994	1	1	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	a0010	994	1	0	0	1	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	a0011	994	1	1	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC2_chr9_16404503_16875670	1/1	a0001	1099	152	64	20	45	1	20	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	a0002	1099	8	0	2	6	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	a0003	1099	3	2	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	a0004	1099	3	3	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	a0005	1099	2	2	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	a0006	1099	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	a0007	1099	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	a0008	1099	1	0	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	a0009	1099	1	0	0	0	1	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	a0010	1099	1	0	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	a0011	1099	1	0	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	a0012	1099	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	a0013	1099	1	0	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNIP1_chr5_173139531_173169387	1/1	a0001	228	349	92	68	128	18	41	copy fasta	BNIP1	chr5	173139531	173169387
BNIP1_chr5_173139531_173169387	0/0	a0002	228	2	2	0	0	0	0	copy fasta	BNIP1	chr5	173139531	173169387
BNIP1_chr5_173139531_173169387	0/0	a0003	228	1	0	0	0	0	1	copy fasta	BNIP1	chr5	173139531	173169387
BNIP2_chr15_59654146_59694320	1/1	a0001	314	411	96	76	178	14	45	copy fasta	BNIP2	chr15	59654146	59694320