JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIM49D1_chr11_89906409_89927245	0/0	a0005	452	2	2	0	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	a0006	452	2	0	0	2	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	a0007	452	2	2	0	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	a0008	452	1	1	0	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	a0009	452	1	0	1	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D1_chr11_89906409_89927245	0/0	a0010	452	1	0	1	0	0	0	copy fasta	TRIM49D1	chr11	89906409	89927245
TRIM49D2_chr11_89919064_89938063	0/0	a0001	452	145	22	32	71	5	15	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	a0002	452	88	33	15	28	5	7	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	a0003	452	7	6	1	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	a0004	452	6	0	0	5	0	1	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	a0005	452	2	1	1	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	a0006	452	2	2	0	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	a0007	452	1	1	0	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	a0008	452	1	0	0	1	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	a0009	452	1	0	1	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	a0010	452	1	0	0	1	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	a0011	452	1	1	0	0	0	0	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49D2_chr11_89919064_89938063	0/0	a0012	12	1	0	0	0	0	1	copy fasta	TRIM49D2	chr11	89919064	89938063
TRIM49_chr11_89792655_89813575	1/0	a0001	452	69	7	16	28	5	12	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	a0002	452	69	2	16	37	6	8	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	a0003	452	49	16	9	18	1	5	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	a0004	452	33	1	4	25	0	3	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	a0005	452	11	0	0	7	0	4	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	a0006	452	7	6	1	0	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	a0007	452	4	0	0	0	2	2	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	a0008	452	3	1	0	1	0	1	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	a0009	452	2	0	0	0	0	2	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	a0010	452	2	0	0	2	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	a0011	452	1	0	0	1	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	a0012	452	1	0	0	0	0	1	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	a0013	452	1	0	0	1	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	a0014	452	1	1	0	0	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM4_chr7_99885403_99924530	1/1	a0001	474	283	62	57	112	13	37	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	a0002	474	16	0	1	15	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	a0003	474	13	7	2	0	1	3	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	a0004	474	3	3	0	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	a0005	474	3	3	0	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	a0006	474	3	3	0	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	a0007	474	1	0	0	1	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM50_chr7_73307536_73333082	1/1	a0001	487	337	80	71	138	12	34	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	a0002	487	2	2	0	0	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	a0003	487	2	0	1	0	1	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	a0004	487	1	0	0	1	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	a0005	487	1	0	0	1	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	a0006	487	1	0	0	0	1	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	a0007	487	1	0	0	1	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	a0008	487	1	0	0	1	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM51G_chr11_48970498_48988885	0/0	a0001	452	189	43	42	75	11	18	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	a0002	201	137	19	16	78	5	19	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/1	a0003	452	76	23	12	37	0	3	copy fasta	TRIM51G	chr11	48970498	48988885