JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIM58_chr1_247852187_247885138	0/0	a0004	486	51	2	12	28	2	7	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0005	486	8	0	3	4	0	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0006	486	8	8	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0007	486	6	2	1	3	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0008	486	3	0	0	3	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0009	486	2	2	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0010	486	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0011	486	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0012	486	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0013	225	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0014	486	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0015	486	1	0	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0016	486	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0017	486	1	0	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0018	486	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	a0019	486	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM59_chr3_160430503_160454786	1/1	a0001	403	351	92	70	132	14	41	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	a0002	403	2	0	0	2	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	a0003	403	2	0	0	1	0	1	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	a0004	403	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	a0005	403	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	a0006	403	1	0	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	a0007	403	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	a0008	403	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM5_chr11_5658195_5690074	1/0	a0001	493	158	55	23	61	4	14	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	a0002	493	130	24	14	80	4	8	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/1	a0003	493	59	2	14	39	0	3	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	a0004	493	52	9	18	15	4	6	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	a0005	493	29	0	4	15	1	9	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	a0006	493	5	0	1	0	2	2	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	a0007	493	4	3	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	a0008	493	2	0	1	0	0	1	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	a0009	493	1	0	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	a0010	493	1	1	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	a0011	493	1	0	0	0	1	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	a0012	493	1	1	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	a0013	493	1	1	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	a0014	493	1	0	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	a0015	493	1	0	0	0	0	1	copy fasta	TRIM5	chr11	5658195	5690074
TRIM60_chr4_165026999_165046749	1/1	a0001	471	369	90	73	146	14	44	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	a0002	471	8	6	2	0	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	a0003	471	5	0	0	4	0	1	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	a0004	471	2	0	0	2	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	a0005	471	1	0	0	0	0	1	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	a0006	471	1	1	0	0	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	a0007	230	1	0	1	0	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	a0008	471	1	1	0	0	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM61_chr4_164963281_164982657	1/1	a0001	471	154	34	30	60	9	19	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	a0002	471	149	25	17	90	3	14	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	a0003	471	98	35	28	18	4	13	copy fasta	TRIM61	chr4	164963281	164982657