JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIM61_chr4_164963281_164982657	0/0	a0004	430	3	0	0	3	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	a0005	471	2	0	0	2	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	a0006	471	1	0	0	1	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	a0007	471	1	0	1	0	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM62_chr1_33140399_33187043	1/1	a0001	475	325	78	52	149	10	34	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	a0002	475	12	12	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	a0003	475	2	0	0	2	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	a0004	475	1	0	0	1	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM63_chr1_26046301_26072630	1/1	a0001	353	246	62	46	110	7	19	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	a0002	353	91	36	19	26	3	7	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	a0003	353	1	0	1	0	0	0	copy fasta	TRIM63	chr1	26046301	26072630
TRIM64B_chr11_89865438_89883487	1/0	a0001	449	90	6	13	60	0	10	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0002	449	33	1	6	25	1	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0003	449	20	8	3	9	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0004	127	18	2	3	8	2	3	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0005	127	14	1	1	11	0	1	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0006	449	12	1	0	8	0	3	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0007	449	3	3	0	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0008	449	3	0	0	3	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0009	127	3	0	1	0	1	1	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0010	449	2	0	0	2	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0011	449	2	0	0	2	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0012	449	1	0	0	1	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0013	449	1	1	0	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0014	449	1	0	1	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0015	449	1	1	0	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0016	449	1	0	1	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0017	449	1	0	0	1	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0018	449	1	0	0	1	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0019	449	1	0	0	1	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	a0020	449	1	0	1	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64C_chr11_49048714_49064112	1/0	a0001	450	183	43	26	81	8	24	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	a0002	450	136	11	33	71	6	15	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/1	a0003	450	70	17	11	37	0	4	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	a0004	450	8	7	1	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	a0005	453	4	4	0	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	a0006	191	4	4	0	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	a0007	450	2	1	1	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	a0008	450	1	1	0	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	a0009	450	1	1	0	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	a0010	450	1	1	0	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	a0011	450	1	0	0	1	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	a0012	450	1	0	0	0	0	1	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64_chr11_89961037_89979072	1/0	a0001	449	20	0	5	14	0	0	copy fasta	TRIM64	chr11	89961037	89979072
TRIM64_chr11_89961037_89979072	0/0	a0002	449	1	0	0	1	0	0	copy fasta	TRIM64	chr11	89961037	89979072
TRIM64_chr11_89961037_89979072	0/0	a0003	449	1	0	0	1	0	0	copy fasta	TRIM64	chr11	89961037	89979072
TRIM64_chr11_89961037_89979072	0/0	a0004	449	1	0	0	1	0	0	copy fasta	TRIM64	chr11	89961037	89979072
TRIM64_chr11_89961037_89979072	0/0	a0005	449	1	0	0	1	0	0	copy fasta	TRIM64	chr11	89961037	89979072
TRIM64_chr11_89961037_89979072	0/0	a0006	449	1	0	1	0	0	0	copy fasta	TRIM64	chr11	89961037	89979072
TRIM65_chr17_75883963_75901951	1/1	a0001	517	161	14	38	79	5	23	copy fasta	TRIM65	chr17	75883963	75901951