JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIM65_chr17_75883963_75901951	0/0	a0002	517	151	49	22	62	7	11	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	a0003	517	13	13	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	a0004	517	10	6	3	0	0	1	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	a0005	517	9	8	1	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	a0006	513	3	3	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	a0007	517	2	2	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	a0008	517	2	0	0	0	0	2	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	a0009	521	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	a0010	517	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	a0011	149	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	a0012	517	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	a0013	517	1	1	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	a0014	517	1	0	0	0	0	1	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	a0015	513	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM66_chr11_8607040_8687665	0/1	a0001	1392	125	37	21	44	5	17	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0002	1392	78	2	15	48	6	7	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0003	1392	60	14	10	32	1	3	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0004	1392	41	0	11	23	2	5	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0005	1392	9	0	0	9	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0006	1392	9	8	1	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0007	1392	7	0	0	7	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0008	1392	7	1	2	0	2	2	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0009	1392	6	0	0	6	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0010	1392	6	6	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0011	1392	5	4	0	0	0	1	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0012	1392	5	5	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0013	1392	5	5	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0014	1392	4	3	1	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0015	1392	4	0	3	0	1	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0016	1392	3	0	0	0	0	3	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0017	1392	2	2	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0018	1392	2	0	2	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0019	1392	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0020	1392	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0021	1392	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0022	1392	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0023	1392	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0024	1392	1	0	0	0	1	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0025	856	1	0	1	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0026	1392	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	1/0	a0027	1392	1	0	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0028	1392	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0029	1392	1	0	1	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	a0030	1392	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM67_chr1_231157058_231226565	1/1	a0001	783	344	88	63	146	12	33	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	a0002	783	3	0	3	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	a0003	783	2	0	0	0	0	2	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	a0004	783	1	0	0	0	0	1	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	a0005	783	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	a0006	783	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565