JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIM67_chr1_231157058_231226565	0/0	a0007	783	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	a0008	783	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM68_chr11_4593672_4613231	1/1	a0001	485	358	92	63	148	11	42	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	a0002	485	4	0	3	0	1	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM69_chr15_44731528_44772827	0/0	a0001	500	189	39	40	77	12	21	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/1	a0002	500	54	10	6	30	1	6	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	a0003	500	45	2	8	25	1	9	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	a0004	500	34	14	4	12	1	3	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	a0005	500	9	4	1	0	3	1	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	a0006	500	6	6	0	0	0	0	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	a0007	500	6	4	2	0	0	0	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	a0008	500	2	0	0	0	0	2	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	a0009	500	2	1	1	0	0	0	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	a0010	500	1	0	0	1	0	0	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	a0011	500	1	0	0	1	0	0	copy fasta	TRIM69	chr15	44731528	44772827
TRIM6_chr11_5591637_5617952	1/1	a0001	516	429	73	83	214	14	43	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	a0002	516	28	2	4	12	4	6	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	a0003	516	14	13	1	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	a0004	516	3	3	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	a0005	516	2	2	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	a0006	516	1	0	0	1	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	a0007	516	1	0	0	0	0	1	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	a0008	516	1	0	0	1	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	a0009	516	1	1	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM71_chr3_32812997_32902824	1/1	a0001	868	325	92	50	131	16	34	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	a0002	868	2	0	0	2	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	a0003	868	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM72_chr16_31209119_31236537	1/1	a0001	477	303	86	58	109	13	35	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	a0002	477	5	4	1	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	a0003	477	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	a0004	477	1	0	0	0	1	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	a0005	477	1	0	1	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	a0006	477	1	0	0	0	0	1	copy fasta	TRIM72	chr16	31209119	31236537
TRIM73_chr7_75390629_75410605	0/0	a0001	250	266	57	66	88	15	40	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	a0002	162	45	28	8	1	1	7	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	a0003	250	3	2	0	1	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	a0004	250	3	0	1	2	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	a0005	250	2	2	0	0	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	a0006	250	1	1	0	0	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	a0007	250	1	0	1	0	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	a0008	162	1	0	0	0	0	1	copy fasta	TRIM73	chr7	75390629	75410605
TRIM74_chr7_72954485_72974466	0/0	a0001	250	152	51	34	44	3	20	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	a0002	250	76	23	16	23	4	10	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	a0003	250	70	2	12	44	4	8	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	a0004	250	3	0	0	3	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	a0005	250	1	0	0	1	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	a0006	246	1	0	0	0	1	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	a0007	250	1	0	0	1	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM75_chr4_165048866_165065554	1/1	a0001	468	409	93	76	180	16	42	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	a0002	468	5	4	1	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554