JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIML2_chr4_188086272_188114603	0/0	a0002	437	6	5	1	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	a0003	437	6	0	5	0	0	1	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	a0004	437	3	1	2	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	a0005	437	2	0	0	2	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	a0006	437	2	1	1	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	a0007	437	2	0	0	2	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	a0008	437	2	2	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	a0009	437	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	a0010	437	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	a0011	437	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	a0012	437	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	a0013	437	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	a0014	437	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIOBP_chr22_37692048_37781556	0/0	a0001	2461	79	16	10	41	3	9	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/1	a0002	2463	75	1	20	38	5	10	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0003	2365	40	9	14	8	5	4	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0004	2365	28	25	2	0	1	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0005	2365	11	5	2	0	0	4	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0006	2461	5	0	2	0	3	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0007	2535	4	0	0	4	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0008	2365	4	4	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0009	2365	4	4	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0010	2461	3	0	3	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0011	2461	3	0	0	3	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0012	2461	3	0	3	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	1/0	a0013	2365	3	0	0	0	1	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0014	2365	2	2	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0015	2463	2	0	0	2	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0016	2267	2	2	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0017	2364	2	0	0	2	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0018	2461	2	0	0	0	0	2	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0019	2461	2	0	0	2	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0020	2463	2	0	0	2	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0021	2463	2	0	0	0	0	2	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0022	2561	2	0	0	2	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0023	2463	2	1	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0024	2365	2	2	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0025	2269	2	2	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0026	2463	2	0	0	2	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0027	2365	2	1	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0028	2365	2	0	2	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0029	2365	1	0	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0030	2461	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0031	2461	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0032	2365	1	0	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0033	973	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0034	2461	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0035	2461	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0036	2461	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0037	2461	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556