JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BNIP2_chr15_59654146_59694320	0/0	a0002	314	1	0	0	0	0	1	copy fasta	BNIP2	chr15	59654146	59694320
BNIP3L_chr8_26378054_26418127	1/1	a0001	219	405	92	76	179	14	42	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	a0002	219	1	0	0	1	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3_chr10_131962684_131986923	1/1	a0001	194	437	95	72	206	16	46	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	a0002	194	1	1	0	0	0	0	copy fasta	BNIP3	chr10	131962684	131986923
BNIP5_chr6_36310761_36341888	1/1	a0001	652	254	56	26	134	8	28	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0002	652	119	36	29	29	6	19	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0003	652	29	1	15	13	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0004	652	6	0	1	4	0	1	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0005	652	2	0	1	0	1	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0006	652	1	0	1	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0007	652	1	0	1	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0008	652	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0009	652	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0010	652	1	1	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0011	652	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0012	652	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0013	652	1	1	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0014	652	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0015	652	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0016	652	1	1	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0017	652	1	0	0	0	1	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0018	652	1	1	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	a0019	652	1	1	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIPL_chr1_151031586_151052720	1/1	a0001	357	311	74	47	133	16	39	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	a0002	357	21	15	6	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	a0003	357	9	0	7	0	0	2	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	a0004	357	5	5	0	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	a0005	357	4	0	0	2	0	2	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	a0006	357	3	3	0	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	a0007	357	2	0	1	0	1	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	a0008	357	2	0	2	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	a0009	357	2	0	1	0	0	1	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	a0010	272	1	1	0	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	a0011	357	1	0	0	1	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	a0012	357	1	0	0	0	1	0	copy fasta	BNIPL	chr1	151031586	151052720
BOC_chr3_113206557_113292459	1/1	a0001	1115	328	66	63	148	11	38	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	a0002	1115	21	12	2	6	1	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	a0003	1115	17	16	1	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	a0004	1115	8	0	0	8	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	a0005	1115	2	2	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	a0006	1115	2	0	0	2	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	a0007	1115	1	0	0	1	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	a0008	1115	1	0	1	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	a0009	1115	1	0	0	1	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	a0010	1115	1	0	0	1	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	a0011	1115	1	0	0	1	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	a0012	1115	1	1	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	a0013	1115	1	0	1	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	a0014	1115	1	1	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459