JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIOBP_chr22_37692048_37781556	0/0	a0038	2461	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0039	2461	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0040	2558	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0041	2461	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0042	2365	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0043	2463	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0044	2463	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0045	2316	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0046	2463	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0047	2463	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0048	2463	1	0	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0049	2463	1	0	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0050	2463	1	0	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0051	2365	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0052	2365	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0053	2365	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0054	2365	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0055	2365	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0056	2316	1	0	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0057	2365	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	a0058	2365	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIO_chr5_14138342_14515204	1/1	a0001	3097	175	61	42	42	6	22	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0002	3093	4	3	1	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0003	3097	3	3	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0004	3097	2	2	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0005	3097	2	2	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0006	3097	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0007	3097	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0008	3097	1	0	0	1	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0009	3097	1	0	0	0	0	1	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0010	3097	1	0	0	1	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0011	3097	1	0	1	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0012	3097	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0013	3097	1	0	0	0	0	1	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0014	3097	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0015	3097	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0016	3097	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	a0017	3097	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIP10_chr19_6734680_6756530	1/1	a0001	601	422	93	80	185	17	45	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	a0002	601	9	0	4	0	1	4	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	a0003	601	3	3	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	a0004	601	2	0	2	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	a0005	601	1	0	0	0	0	1	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	a0006	601	1	1	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	a0007	601	1	1	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	a0008	601	1	0	0	1	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	a0009	601	1	1	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	a0010	601	1	1	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP11_chr14_91960991_92045059	1/1	a0001	1979	190	54	46	59	12	17	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0002	1979	103	22	8	53	4	16	copy fasta	TRIP11	chr14	91960991	92045059