JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIP11_chr14_91960991_92045059	0/0	a0003	1979	28	0	0	24	0	4	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0004	1979	6	0	2	4	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0005	1979	5	5	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0006	1979	4	0	2	0	0	2	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0007	1979	4	4	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0008	1979	4	3	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0009	1979	3	2	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0010	1979	2	2	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0011	1979	2	0	0	2	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0012	1979	2	0	2	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0013	1979	1	0	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0014	1979	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0015	1979	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0016	1979	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0017	1979	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0018	1979	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0019	1979	1	0	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0020	1979	1	0	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0021	1979	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0022	1979	1	0	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	a0023	1979	1	0	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP12_chr2_229758837_229927009	1/1	a0001	2067	329	92	64	113	16	42	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	a0002	2067	1	0	0	1	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP13_chr5_887884_923120	1/1	a0001	432	395	93	78	162	16	44	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	a0002	432	2	0	0	2	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	a0003	432	2	2	0	0	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	a0004	432	1	0	0	1	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	a0005	432	1	0	0	1	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	a0006	432	1	1	0	0	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP4_chr15_64382836_64460303	1/1	a0001	581	217	94	32	39	14	36	copy fasta	TRIP4	chr15	64382836	64460303
TRIP4_chr15_64382836_64460303	0/0	a0002	581	2	2	0	0	0	0	copy fasta	TRIP4	chr15	64382836	64460303
TRIP4_chr15_64382836_64460303	0/0	a0003	581	1	0	0	1	0	0	copy fasta	TRIP4	chr15	64382836	64460303
TRIP6_chr7_100862387_100878454	1/1	a0001	476	275	83	37	114	9	30	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	a0002	476	140	5	32	82	4	17	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	a0003	476	4	0	0	4	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	a0004	476	2	0	1	0	1	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	a0005	476	2	2	0	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	a0006	476	2	0	0	0	2	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	a0007	476	1	1	0	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	a0008	476	1	0	1	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	a0009	476	1	0	0	1	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	a0010	476	1	0	0	1	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	a0011	476	1	0	0	0	0	1	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	a0012	476	1	0	1	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	a0013	476	1	1	0	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIQK_chr8_92878534_92971144	1/1	a0001	86	342	84	50	156	14	36	copy fasta	TRIQK	chr8	92878534	92971144
TRIR_chr19_12725640_12739684	1/1	a0001	176	263	92	64	69	10	26	copy fasta	TRIR	chr19	12725640	12739684
TRIR_chr19_12725640_12739684	0/0	a0002	176	1	0	0	1	0	0	copy fasta	TRIR	chr19	12725640	12739684
TRIT1_chr1_39833110_39888504	1/1	a0001	467	291	80	47	129	7	26	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	a0002	467	82	13	10	54	1	4	copy fasta	TRIT1	chr1	39833110	39888504