JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIT1_chr1_39833110_39888504	0/0	a0003	467	2	0	0	0	0	2	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	a0004	467	1	0	0	1	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	a0005	467	1	0	1	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	a0006	467	1	1	0	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRMO_chr9_97899489_97927500	0/0	a0001	441	221	58	23	115	4	21	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	a0002	441	104	18	30	36	6	14	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	1/1	a0003	441	33	0	15	2	7	7	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	a0004	444	6	0	6	0	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	a0005	441	4	0	0	4	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	a0006	441	1	1	0	0	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	a0007	441	1	1	0	0	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	a0008	441	1	0	0	1	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	a0009	441	1	0	0	0	1	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	a0010	441	1	0	0	1	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	a0011	441	1	0	0	1	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMT10A_chr4_99541711_99569039	1/1	a0001	339	384	94	66	182	0	40	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10B_chr9_37748805_37783972	1/1	a0001	316	373	72	81	160	14	44	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	a0002	316	7	6	1	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	a0003	316	3	3	0	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	a0004	316	3	3	0	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	a0005	316	1	0	0	1	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	a0006	316	1	0	0	1	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10C_chr3_101556868_101571446	1/0	a0001	403	360	77	65	168	15	34	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	a0002	403	57	9	12	25	1	10	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	a0003	403	5	5	0	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	a0004	403	3	0	3	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	a0005	403	1	1	0	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	a0006	403	1	1	0	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	a0007	403	1	1	0	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	a0008	403	1	0	0	1	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT112_chr11_64311460_64322559	1/1	a0001	125	378	92	70	158	12	44	copy fasta	TRMT112	chr11	64311460	64322559
TRMT11_chr6_125981540_126044276	1/1	a0001	463	181	81	32	30	12	24	copy fasta	TRMT11	chr6	125981540	126044276
TRMT11_chr6_125981540_126044276	0/0	a0002	463	6	0	6	0	0	0	copy fasta	TRMT11	chr6	125981540	126044276
TRMT11_chr6_125981540_126044276	0/0	a0003	463	3	3	0	0	0	0	copy fasta	TRMT11	chr6	125981540	126044276
TRMT11_chr6_125981540_126044276	0/0	a0004	463	1	1	0	0	0	0	copy fasta	TRMT11	chr6	125981540	126044276
TRMT11_chr6_125981540_126044276	0/0	a0005	463	1	1	0	0	0	0	copy fasta	TRMT11	chr6	125981540	126044276
TRMT12_chr8_124445820_124458026	0/1	a0001	448	218	64	29	88	5	31	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	1/0	a0002	448	185	23	36	96	13	16	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	a0003	448	1	1	0	0	0	0	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	a0004	448	1	0	0	0	0	1	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	a0005	448	1	0	1	0	0	0	copy fasta	TRMT12	chr8	124445820	124458026
TRMT13_chr1_100128163_100155496	0/1	a0001	481	275	37	64	127	12	34	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	1/0	a0002	481	82	53	7	13	2	6	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	0/0	a0003	481	1	0	1	0	0	0	copy fasta	TRMT13	chr1	100128163	100155496
TRMT1L_chr1_185113101_185161953	1/1	a0001	733	357	89	75	151	10	30	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	a0002	733	2	1	1	0	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	a0003	730	1	0	0	1	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	a0004	733	1	1	0	0	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	a0005	733	1	1	0	0	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1_chr19_13099907_13121740	1/1	a0001	659	363	96	79	122	16	48	copy fasta	TRMT1	chr19	13099907	13121740