JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRMT1_chr19_13099907_13121740	0/0	a0002	659	7	0	0	7	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	a0003	149	1	1	0	0	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	a0004	504	1	0	0	1	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	a0005	659	1	1	0	0	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	a0006	659	1	0	1	0	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT2A_chr22_20106875_20122226	1/1	a0001	625	426	97	63	204	17	43	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	a0002	625	6	0	0	6	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	a0003	625	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	a0004	625	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	a0005	625	1	0	0	0	1	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	a0006	625	1	0	1	0	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	a0007	625	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	a0008	625	1	1	0	0	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	a0009	547	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	a0010	625	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	a0011	625	1	0	0	0	0	1	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	a0012	625	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2B_chrX_101004350_101057111	1/1	a0001	504	258	70	44	102	8	32	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	a0002	504	3	1	1	0	1	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	a0003	226	1	0	0	1	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	a0004	504	1	1	0	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	a0005	445	1	0	0	1	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT44_chr4_8435777_8481555	0/0	a0001	757	244	62	41	103	9	29	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	1/1	a0002	757	115	8	20	73	5	7	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0003	757	11	11	0	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0004	757	10	10	0	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0005	757	4	1	2	0	0	1	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0006	757	3	0	0	3	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0007	757	2	0	0	2	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0008	757	2	1	1	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0009	757	2	0	0	0	0	2	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0010	757	2	0	0	2	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0011	757	2	0	0	2	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0012	757	2	0	0	0	0	2	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0013	757	1	0	0	0	0	1	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0014	757	1	0	1	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0015	529	1	0	0	1	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0016	757	1	1	0	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0017	757	1	0	1	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0018	757	1	0	0	0	0	1	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0019	757	1	0	0	1	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0020	430	1	0	0	1	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0021	757	1	0	0	1	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0022	757	1	0	0	1	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	a0023	757	1	0	0	0	0	1	copy fasta	TRMT44	chr4	8435777	8481555
TRMT5_chr14_60966441_60986079	1/1	a0001	509	382	66	55	199	16	44	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	a0002	509	2	2	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	a0003	509	2	1	1	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	a0004	509	1	1	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	a0005	509	1	0	0	1	0	0	copy fasta	TRMT5	chr14	60966441	60986079