JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRMT5_chr14_60966441_60986079	0/0	a0006	509	1	0	0	1	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	a0007	509	1	1	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	a0008	509	1	0	0	1	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	a0009	509	1	1	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT61A_chr14_103524196_103542073	1/1	a0001	289	434	96	82	191	16	47	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	a0002	289	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	a0003	289	1	0	0	0	0	1	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	a0004	289	1	0	0	1	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	a0005	289	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61B_chr2_28844821_28875309	1/1	a0001	477	349	76	71	144	18	38	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	a0002	477	5	5	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	a0003	475	1	1	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	a0004	477	1	1	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	a0005	477	1	1	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	a0006	477	1	1	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	a0007	477	1	0	1	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	a0008	477	1	1	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT6_chr20_5932228_5955533	1/1	a0001	497	297	49	51	146	17	32	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	a0002	497	121	49	21	34	1	16	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	a0003	496	8	0	8	0	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	a0004	497	1	0	0	1	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	a0005	497	1	0	0	1	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT9B_chr8_12940673_13034777	0/1	a0001	454	203	18	38	111	11	24	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0002	454	72	20	11	30	1	10	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0003	52	65	35	12	11	1	6	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0004	454	17	7	5	2	1	2	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0005	454	8	8	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0006	454	5	0	0	5	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0007	454	3	3	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0008	454	2	0	0	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0009	60	2	0	0	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	1/0	a0010	454	1	0	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0011	454	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0012	454	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0013	454	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0014	454	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0015	454	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	a0016	454	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMU_chr22_46330714_46362340	1/1	a0001	421	245	42	49	108	12	32	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	a0002	421	26	18	4	0	2	2	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	a0003	421	14	13	1	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	a0004	421	5	0	0	5	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	a0005	421	4	3	1	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	a0006	421	3	3	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	a0007	421	3	3	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	a0008	421	2	2	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	a0009	421	1	0	1	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	a0010	421	1	0	0	1	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRNAU1AP_chr1_28548085_28583545	1/1	a0001	287	293	92	72	65	18	44	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNAU1AP_chr1_28548085_28583545	0/0	a0002	287	1	0	1	0	0	0	copy fasta	TRNAU1AP	chr1	28548085	28583545