JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRNAU1AP_chr1_28548085_28583545	0/0	a0003	287	1	0	0	1	0	0	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNAU1AP_chr1_28548085_28583545	0/0	a0004	287	1	0	1	0	0	0	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNP1_chr1_26988692_27005886	0/1	a0001	227	277	82	62	82	18	32	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	1/0	a0002	227	11	10	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNT1_chr3_3121940_3154023	0/1	a0001	434	366	62	73	175	12	43	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	1/0	a0002	434	31	28	2	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	a0003	434	1	0	0	1	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	a0004	367	1	0	0	0	0	1	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	a0005	434	1	0	1	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	a0006	434	1	1	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	a0007	434	1	1	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TROAP_chr12_49318255_49336731	1/1	a0001	778	269	83	43	98	11	32	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	a0002	778	7	1	0	4	1	1	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	a0003	778	3	3	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	a0004	778	2	2	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	a0005	778	2	2	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	a0006	778	2	2	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	a0007	778	1	0	0	0	0	1	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	a0008	778	1	1	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	a0009	778	1	0	0	0	0	1	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	a0010	778	1	0	1	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	a0011	778	1	1	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	a0012	778	1	0	0	0	0	1	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	a0013	778	1	1	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TRO_chrX_54915824_54936431	1/1	a0001	1431	284	69	49	122	11	31	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0002	1431	8	7	1	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0003	1431	5	0	0	5	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0004	34	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0005	324	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0006	1431	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0007	449	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0008	1431	1	0	1	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0009	1238	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0010	1331	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0011	1431	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0012	1431	1	1	0	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0013	575	1	0	1	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0014	1431	1	1	0	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0015	267	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	a0016	1431	1	1	0	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRPA1_chr8_72016250_72080584	0/1	a0001	1119	224	51	41	110	3	18	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	a0002	1119	67	0	4	55	1	7	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	1/0	a0003	1119	37	3	17	3	3	10	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	a0004	1119	31	25	2	2	2	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	a0005	1119	18	0	2	10	4	2	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	a0006	1119	11	6	2	0	1	2	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	a0007	1119	4	1	0	3	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	a0008	1119	3	3	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	a0009	1119	2	0	1	0	0	1	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	a0010	1119	2	0	1	0	0	1	copy fasta	TRPA1	chr8	72016250	72080584