JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRPA1_chr8_72016250_72080584	0/0	a0011	1119	1	1	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	a0012	1119	1	0	0	1	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	a0013	1119	1	0	0	0	0	1	copy fasta	TRPA1	chr8	72016250	72080584
TRPC1_chr3_142719034_142812888	1/1	a0001	793	324	79	50	159	8	26	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	a0002	793	12	11	1	0	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	a0003	793	3	0	1	0	2	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	a0004	793	1	0	0	1	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC3_chr4_121869481_121957060	1/1	a0001	921	341	94	68	137	10	30	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	a0002	921	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	a0003	921	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	a0004	921	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC4AP_chr20_34997404_35097807	1/1	a0001	797	331	95	58	130	12	34	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	a0002	797	1	0	0	1	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	a0003	797	1	0	0	1	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	a0004	797	1	1	0	0	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4_chr13_37627063_37874772	1/1	a0001	977	278	92	41	99	10	34	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	a0002	977	3	0	0	3	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	a0003	977	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	a0004	977	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	a0005	977	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	a0006	977	1	0	1	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	a0007	977	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC5OS_chrX_111871181_111908990	1/1	a0001	111	244	65	47	95	7	28	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/0	a0002	111	5	5	0	0	0	0	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5_chrX_111763011_112087776	1/1	a0001	973	159	54	20	62	5	16	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	a0002	973	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	a0003	973	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC6_chr11_101446564_101589007	1/1	a0001	931	214	84	38	63	7	20	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	a0002	931	13	0	1	11	0	1	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	a0003	931	11	0	3	2	1	5	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	a0004	931	11	0	2	7	0	2	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	a0005	931	1	0	0	1	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	a0006	931	1	1	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	a0007	931	1	1	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC7_chr5_136207745_136370545	1/1	a0001	862	255	72	42	101	14	24	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	a0002	862	1	1	0	0	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	a0003	862	1	0	0	1	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	a0004	862	1	1	0	0	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPM1_chr15_30996065_31106725	0/0	a0001	1625	121	48	27	26	4	16	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/1	a0002	1625	38	20	4	6	3	4	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0003	1625	23	1	10	8	0	4	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0004	1625	13	5	1	4	1	2	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0005	1396	12	4	3	0	0	5	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0006	1625	11	2	7	0	1	1	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0007	1396	7	4	0	2	0	1	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0008	1396	4	0	1	3	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0009	1625	3	0	2	0	1	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0010	1625	3	0	3	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0011	1625	2	0	1	0	1	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0012	1625	2	0	0	0	1	1	copy fasta	TRPM1	chr15	30996065	31106725