JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRPM1_chr15_30996065_31106725	0/0	a0013	1625	2	0	1	0	0	1	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0014	1625	2	0	0	2	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0015	1625	2	2	0	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0016	1625	2	2	0	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0017	1625	1	1	0	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0018	1625	1	0	0	0	0	1	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0019	1625	1	1	0	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0020	1625	1	1	0	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0021	1625	1	0	0	1	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0022	1625	1	0	0	0	0	1	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0023	1625	1	1	0	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	a0024	1625	1	0	0	0	0	1	copy fasta	TRPM1	chr15	30996065	31106725
TRPM2_chr21_44348621_44447644	0/0	a0001	1503	28	5	10	6	1	6	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/1	a0002	1503	5	0	1	2	1	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	a0003	1503	3	1	2	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	1/0	a0004	1503	2	0	1	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	a0005	1503	2	0	1	0	0	1	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	a0006	1503	1	0	0	0	0	1	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	a0007	1503	1	1	0	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	a0008	1503	1	1	0	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	a0009	1503	1	0	1	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM3_chr9_70524060_71126621	0/0	a0001	1719	131	38	18	52	8	15	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	a0002	1719	39	5	7	14	6	7	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	a0003	1719	26	11	4	2	0	9	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	a0004	1719	8	8	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	a0005	1719	5	5	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	a0006	1719	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	a0007	1719	1	0	0	0	0	1	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	a0008	1719	1	0	1	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	a0009	1719	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	a0010	1719	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM4_chr19_49152792_49216836	1/0	a0001	1214	271	63	63	95	14	35	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0002	1210	12	11	1	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/1	a0003	1214	5	2	0	0	1	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0004	1214	4	4	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0005	1202	2	0	0	0	1	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0006	1214	2	0	0	2	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0007	1214	2	0	2	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0008	1214	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0009	524	1	0	1	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0010	1214	1	0	0	0	0	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0011	1214	1	1	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0012	913	1	0	1	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0013	1214	1	0	0	0	0	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0014	1112	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0015	1214	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0016	1214	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0017	1214	1	0	0	0	0	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0018	1214	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0019	1214	1	1	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836