JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRPM4_chr19_49152792_49216836	0/0	a0020	98	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	a0021	1214	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM5_chr11_2399515_2449514	0/0	a0001	1165	202	32	30	125	2	13	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0002	1165	95	25	22	34	1	13	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	1/1	a0003	1165	45	1	11	11	8	12	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0004	1165	11	10	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0005	1165	10	6	3	0	0	1	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0006	1165	10	4	4	0	0	2	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0007	1165	9	1	0	8	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0008	1165	7	0	3	0	4	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0009	1165	3	3	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0010	1165	3	0	1	0	2	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0011	1165	3	0	0	3	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0012	1165	3	0	0	0	0	3	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0013	1165	2	2	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0014	1165	2	0	1	0	1	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0015	1165	2	2	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0016	1165	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0017	1165	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0018	1165	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0019	1165	1	0	0	0	0	1	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0020	1165	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0021	1165	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0022	1165	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0023	1165	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0024	1165	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0025	1165	1	0	0	0	0	1	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0026	1165	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0027	1165	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0028	1165	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0029	1165	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0030	1165	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0031	1165	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0032	1165	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0033	1165	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	a0034	1165	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM6_chr9_74717495_74892921	1/1	a0001	2022	174	38	45	58	11	20	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	a0002	2022	53	23	6	17	1	6	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	a0003	2022	39	8	2	27	0	2	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	a0004	2022	9	5	2	0	2	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	a0005	2022	3	3	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	a0006	2022	2	2	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	a0007	2022	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	a0008	2022	1	0	1	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	a0009	2022	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	a0010	2022	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	a0011	2022	1	0	1	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	a0012	2022	1	0	1	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM7_chr15_50552158_50691797	1/1	a0001	1865	295	78	62	115	9	29	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	a0002	1865	41	1	3	30	3	4	copy fasta	TRPM7	chr15	50552158	50691797