JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRPM7_chr15_50552158_50691797	0/0	a0003	1864	5	5	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	a0004	1864	4	4	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	a0005	1865	2	2	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	a0006	1865	1	0	0	0	0	1	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	a0007	1865	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	a0008	1865	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	a0009	1865	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	a0010	1865	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM8_chr2_233912373_234024522	1/1	a0001	1104	187	25	52	73	11	24	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0002	1104	94	43	4	39	0	8	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0003	1104	26	1	8	15	1	1	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0004	1104	4	4	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0005	1104	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0006	1104	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0007	1104	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0008	1104	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0009	1104	1	0	0	0	0	1	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0010	1104	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0011	1104	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0012	1104	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0013	1104	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0014	1104	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	a0015	1104	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPS1_chr8_115403496_115673975	1/1	a0001	1294	188	66	42	46	12	20	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	a0002	1294	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	a0003	1294	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	a0004	1294	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	a0005	1294	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPT1_chr11_64218816_64231186	1/1	a0001	253	307	74	42	148	7	34	copy fasta	TRPT1	chr11	64218816	64231186
TRPT1_chr11_64218816_64231186	0/0	a0002	253	50	7	20	20	1	2	copy fasta	TRPT1	chr11	64218816	64231186
TRPT1_chr11_64218816_64231186	0/0	a0003	253	25	1	7	12	0	5	copy fasta	TRPT1	chr11	64218816	64231186
TRPT1_chr11_64218816_64231186	0/0	a0004	253	9	2	7	0	0	0	copy fasta	TRPT1	chr11	64218816	64231186
TRPT1_chr11_64218816_64231186	0/0	a0005	253	1	0	0	0	0	1	copy fasta	TRPT1	chr11	64218816	64231186
TRPV1_chr17_3560446_3614411	0/0	a0001	839	137	57	42	16	3	19	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0002	839	80	1	10	63	2	4	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0003	839	47	5	14	21	4	3	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0004	839	42	1	2	28	2	9	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	1/0	a0005	839	17	5	2	8	0	1	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0006	839	14	1	6	6	0	1	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0007	839	13	0	1	8	0	4	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0008	839	13	0	0	13	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/1	a0009	839	8	0	0	5	0	2	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0010	839	5	0	0	0	3	2	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0011	839	4	4	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0012	839	2	0	0	2	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0013	839	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0014	839	1	0	0	0	0	1	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0015	839	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0016	839	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0017	839	1	0	1	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411