JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BOD1L1_chr4_13563738_13632725	0/0	a0000	0	1	0	0	0	1	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0001	3051	100	9	32	44	5	10	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	1/0	a0002	3051	69	41	8	10	4	5	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0003	3051	21	0	13	0	2	6	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/1	a0004	3051	18	0	0	11	1	5	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0005	3051	10	10	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0006	3052	6	5	1	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0007	3051	5	4	1	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0008	3051	3	3	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0009	3051	2	0	0	0	0	2	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0010	3051	2	2	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0011	3051	2	0	2	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0012	3051	2	0	1	0	1	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0013	3051	1	0	1	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0014	3051	1	1	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0015	3051	1	0	1	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0016	3051	1	1	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0017	3051	1	0	1	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0018	3051	1	0	0	0	0	1	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0019	3051	1	0	0	0	0	1	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0020	3051	1	0	0	0	0	1	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0021	3051	1	0	0	1	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0022	3051	1	0	0	0	0	1	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0023	3051	1	0	0	1	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0024	3051	1	0	0	1	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0025	3051	1	0	0	1	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0026	3051	1	0	1	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0027	3051	1	0	0	1	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0028	3052	1	1	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	a0029	3051	1	1	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L2_chr18_57142087_57155410	0/0	a0001	172	252	42	37	138	7	28	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	1/1	a0002	172	173	39	29	84	8	11	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	a0003	172	34	8	10	11	1	4	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	a0004	172	4	0	1	3	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	a0005	172	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	a0006	172	1	0	1	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	a0007	172	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	a0008	172	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	a0009	172	1	0	0	0	0	1	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1_chr5_173602145_173621650	1/1	a0001	185	415	94	80	178	18	43	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	a0002	185	1	0	0	0	0	1	copy fasta	BOD1	chr5	173602145	173621650
BOK_chr2_241553745_241579131	1/1	a0001	212	426	93	77	192	14	48	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	a0002	212	3	0	1	0	2	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	a0003	212	2	0	0	2	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	a0004	212	1	1	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	a0005	36	1	0	0	1	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	a0006	212	1	0	0	1	0	0	copy fasta	BOK	chr2	241553745	241579131
BOLA1_chr1_149894568_149905795	1/1	a0001	137	349	94	63	126	14	50	copy fasta	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	a0002	137	7	0	7	0	0	0	copy fasta	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	a0003	137	3	3	0	0	0	0	copy fasta	BOLA1	chr1	149894568	149905795