JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRPV1_chr17_3560446_3614411	0/0	a0018	839	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0019	839	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0020	839	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0021	839	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	a0022	839	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV2_chr17_16410571_16442003	1/1	a0001	764	313	80	76	99	12	44	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	a0002	764	41	0	0	41	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	a0003	764	17	15	2	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	a0004	764	2	0	0	2	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	a0005	764	1	0	0	1	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	a0006	764	1	0	0	1	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	a0007	764	1	0	0	0	0	1	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	a0008	764	1	1	0	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	a0009	764	1	0	0	0	0	1	copy fasta	TRPV2	chr17	16410571	16442003
TRPV3_chr17_3505502_3562812	0/1	a0001	790	226	43	58	78	12	34	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0002	790	54	1	15	25	4	9	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0003	790	34	0	3	30	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0004	790	18	0	0	16	0	2	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0005	790	13	13	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0006	790	11	11	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0007	790	10	7	1	1	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0008	790	8	7	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0009	790	7	7	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0010	790	6	0	0	6	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0011	790	3	0	0	0	0	3	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0012	790	2	2	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	1/0	a0013	790	1	0	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0014	790	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0015	790	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0016	790	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0017	790	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0018	790	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0019	790	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0020	790	1	0	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0021	790	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0022	790	1	0	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0023	790	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	a0024	790	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV4_chr12_109778089_109838398	1/1	a0001	871	306	81	61	106	16	40	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	a0002	871	20	3	0	14	0	3	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	a0003	871	7	0	7	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	a0004	871	3	0	3	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	a0005	871	2	0	2	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	a0006	871	2	2	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	a0007	871	1	1	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	a0008	871	1	0	0	0	0	1	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	a0009	871	1	0	1	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	a0010	871	1	1	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV5_chr7_142903101_142938746	0/0	a0001	729	134	27	28	58	5	16	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/1	a0002	729	78	44	13	15	3	2	copy fasta	TRPV5	chr7	142903101	142938746