JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRPV5_chr7_142903101_142938746	0/0	a0003	729	14	4	2	2	0	6	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	a0004	729	10	9	1	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	a0005	729	6	5	0	1	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	a0006	729	3	3	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	a0007	729	2	2	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	a0008	729	1	0	0	0	0	1	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	a0009	729	1	1	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	a0010	729	1	0	1	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	a0011	729	1	0	0	0	0	1	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	a0012	729	1	1	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	a0013	729	1	0	1	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV6_chr7_142866208_142890745	0/1	a0001	5	261	96	51	67	12	34	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	a0002	5	4	0	1	3	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRRAP_chr7_98873532_99018241	1/1	a0001	3873	247	80	40	97	12	16	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	a0002	3873	2	2	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	a0003	3873	2	0	0	2	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	a0004	3873	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	a0005	3873	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	a0006	3873	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	a0007	3873	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	a0008	3873	1	0	0	0	0	1	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	a0009	3873	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	a0010	3873	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	a0011	3873	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	a0012	3873	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	a0013	3873	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	a0014	3873	1	0	0	0	0	1	copy fasta	TRRAP	chr7	98873532	99018241
TRUB1_chr10_114933195_114982676	0/1	a0001	349	119	71	19	4	5	19	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	1/0	a0002	349	112	20	30	40	4	17	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	a0003	349	5	0	2	0	3	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	a0004	349	1	0	1	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	a0005	349	1	1	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB2_chr9_128300159_128327447	1/1	a0001	331	366	81	54	180	13	36	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	a0002	331	4	4	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	a0003	331	4	0	0	4	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	a0004	331	2	0	0	2	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	a0005	331	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	a0006	331	1	0	0	0	1	0	copy fasta	TRUB2	chr9	128300159	128327447
TSACC_chr1_156333526_156351995	1/1	a0001	125	375	70	77	175	14	37	copy fasta	TSACC	chr1	156333526	156351995
TSACC_chr1_156333526_156351995	0/0	a0002	125	8	8	0	0	0	0	copy fasta	TSACC	chr1	156333526	156351995
TSACC_chr1_156333526_156351995	0/0	a0003	125	2	0	1	0	0	1	copy fasta	TSACC	chr1	156333526	156351995
TSACC_chr1_156333526_156351995	0/0	a0004	125	1	0	0	1	0	0	copy fasta	TSACC	chr1	156333526	156351995
TSBP1_chr6_32287698_32376903	0/1	a0001	561	140	10	36	72	6	15	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0002	561	60	2	5	47	2	4	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0003	561	54	6	2	41	0	5	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0004	561	50	11	6	28	2	3	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0005	561	41	18	11	3	4	5	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0006	561	29	15	4	2	0	8	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0007	561	20	15	5	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0008	561	7	7	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903