JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TSBP1_chr6_32287698_32376903	0/0	a0009	561	6	0	0	3	0	3	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0010	561	5	0	3	0	2	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0011	561	3	3	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0012	561	2	2	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0013	561	1	1	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0014	561	1	1	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0015	561	1	0	0	0	0	1	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	a0016	561	1	1	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSC1_chr9_132886349_132949616	1/1	a0001	1164	277	61	51	133	6	24	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	a0002	1164	42	22	4	12	2	2	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	a0003	1164	9	0	9	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	a0004	1164	2	2	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	a0005	1164	2	2	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	a0006	1164	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	a0007	1164	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	a0008	1164	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	a0009	1164	1	1	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC22D1_chr13_44427143_44581330	1/1	a0001	1073	214	53	42	87	8	22	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	a0002	1072	8	8	0	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	a0003	1072	6	0	6	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	a0004	1073	6	0	2	0	1	3	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	a0005	1073	1	1	0	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	a0006	1073	1	0	1	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	a0007	1073	1	0	1	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	a0008	1073	1	0	0	0	1	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	a0009	1073	1	0	0	0	0	1	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	a0010	1073	1	0	0	1	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D2_chr3_150403298_150471422	1/1	a0001	756	335	63	56	166	9	39	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	a0002	756	49	16	13	10	3	7	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	a0003	756	12	11	1	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	a0004	756	3	3	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	a0005	756	2	0	2	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	a0006	756	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	a0007	756	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	a0008	756	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D3_chrX_107708221_107780787	1/1	a0001	200	214	74	32	79	9	18	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D3_chrX_107708221_107780787	0/0	a0002	44	1	0	0	1	0	0	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D3_chrX_107708221_107780787	0/0	a0003	158	1	0	0	1	0	0	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D4_chr7_100461519_100484214	1/1	a0001	395	360	93	64	144	13	44	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	a0002	395	6	0	0	6	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	a0003	395	5	0	0	5	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	a0004	395	1	0	0	0	1	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	a0005	395	1	0	1	0	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	a0006	395	1	1	0	0	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	a0007	395	1	0	0	0	0	1	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	a0008	395	1	0	0	1	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	a0009	395	1	0	1	0	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	a0010	395	1	0	0	0	0	1	copy fasta	TSC22D4	chr7	100461519	100484214
TSC2_chr16_2042985_2094491	1/1	a0001	1807	275	78	71	72	14	38	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0002	1807	8	0	0	8	0	0	copy fasta	TSC2	chr16	2042985	2094491