JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TSC2_chr16_2042985_2094491	0/0	a0003	1807	7	6	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0004	1807	4	4	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0005	1807	3	0	0	0	2	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0006	1807	2	2	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0007	1807	2	2	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0008	1807	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0009	1807	1	0	0	0	0	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0010	1807	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0011	1807	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0012	1807	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0013	1715	1	0	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0014	1807	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0015	1715	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0016	1801	1	0	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0017	1807	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0018	1817	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0019	1807	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0020	1807	1	0	0	0	0	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0021	1807	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0022	1807	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0023	1807	1	0	0	0	0	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	a0024	1807	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSEN15_chr1_184046730_184079212	1/1	a0001	171	290	83	55	113	13	24	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	a0002	171	130	12	17	80	5	16	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	a0003	171	1	0	0	1	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	a0004	171	1	1	0	0	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN2_chr3_12479480_12538658	1/1	a0001	465	223	68	49	64	12	28	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	a0002	465	37	19	9	7	0	2	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	a0003	465	23	5	8	3	4	3	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	a0004	465	1	0	0	0	0	1	copy fasta	TSEN2	chr3	12479480	12538658
TSEN34_chr19_54186308_54199532	0/1	a0001	310	425	94	88	184	16	42	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	a0002	310	3	0	0	3	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	a0003	310	2	2	0	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	a0004	310	1	0	0	1	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN54_chr17_75511528_75529735	0/1	a0001	526	151	12	28	77	5	28	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	1/0	a0002	526	118	5	26	80	2	4	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0003	526	27	12	2	9	0	4	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0004	526	22	9	5	0	3	5	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0005	526	18	18	0	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0006	526	15	14	1	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0007	526	13	11	2	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0008	528	13	0	8	0	3	2	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0009	526	11	0	4	0	4	3	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0010	526	10	0	2	7	0	1	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0011	528	5	4	1	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0012	528	3	3	0	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0013	526	2	0	0	0	1	1	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0014	526	2	0	1	0	0	1	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0015	526	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0016	526	1	1	0	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735