JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TSEN54_chr17_75511528_75529735	0/0	a0017	526	1	0	1	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0018	526	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0019	526	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0020	82	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0021	526	1	1	0	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0022	526	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0023	526	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0024	526	1	0	1	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0025	526	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0026	526	1	1	0	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0027	526	1	1	0	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	a0028	526	1	0	0	0	0	1	copy fasta	TSEN54	chr17	75511528	75529735
TSFM_chr12_57777787_57802587	1/1	a0001	325	357	87	77	137	14	40	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	a0002	325	4	4	0	0	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	a0003	325	3	2	1	0	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	a0004	325	1	0	0	1	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	a0005	325	1	0	0	1	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	a0006	325	1	0	0	1	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	a0007	325	1	1	0	0	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSG101_chr11_18475311_18531942	1/1	a0001	390	401	92	67	185	12	43	copy fasta	TSG101	chr11	18475311	18531942
TSG101_chr11_18475311_18531942	0/0	a0002	390	3	2	1	0	0	0	copy fasta	TSG101	chr11	18475311	18531942
TSG101_chr11_18475311_18531942	0/0	a0003	203	1	0	0	1	0	0	copy fasta	TSG101	chr11	18475311	18531942
TSG101_chr11_18475311_18531942	0/0	a0004	390	1	0	0	0	0	1	copy fasta	TSG101	chr11	18475311	18531942
TSGA10IP_chr11_65940480_65964966	0/0	a0001	556	171	14	36	102	3	16	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	1/1	a0002	556	131	36	26	42	3	22	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0003	556	22	0	1	21	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0004	556	21	20	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0005	556	11	10	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0006	556	9	8	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0007	556	6	0	0	6	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0008	556	4	0	2	0	2	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0009	556	3	3	0	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0010	556	3	2	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0011	556	3	3	0	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0012	556	2	2	0	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0013	556	1	0	0	1	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0014	556	1	0	0	1	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0015	556	1	0	0	1	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0016	556	1	0	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0017	556	1	0	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	a0018	556	1	0	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10_chr2_98992261_99159942	1/1	a0001	698	317	80	71	127	10	27	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	a0002	698	2	0	0	2	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	a0003	698	1	0	1	0	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	a0004	698	1	0	0	1	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	a0005	698	1	0	0	0	0	1	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	a0006	698	1	0	0	0	0	1	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	a0007	698	1	0	0	0	0	1	copy fasta	TSGA10	chr2	98992261	99159942
TSGA13_chr7_130663643_130691545	1/1	a0001	275	373	95	70	144	16	46	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	a0002	275	12	0	0	12	0	0	copy fasta	TSGA13	chr7	130663643	130691545