JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TSGA13_chr7_130663643_130691545	0/0	a0003	275	1	1	0	0	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSHB_chr1_115024826_115039302	0/1	a0001	138	421	96	77	191	16	40	copy fasta	TSHB	chr1	115024826	115039302
TSHB_chr1_115024826_115039302	1/0	a0002	138	3	0	0	0	2	0	copy fasta	TSHB	chr1	115024826	115039302
TSHB_chr1_115024826_115039302	0/0	a0003	138	2	2	0	0	0	0	copy fasta	TSHB	chr1	115024826	115039302
TSHB_chr1_115024826_115039302	0/0	a0004	138	1	0	1	0	0	0	copy fasta	TSHB	chr1	115024826	115039302
TSHB_chr1_115024826_115039302	0/0	a0005	138	1	0	0	1	0	0	copy fasta	TSHB	chr1	115024826	115039302
TSHR_chr14_80950621_81151306	0/1	a0001	764	215	71	34	86	5	18	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	1/0	a0002	764	35	9	6	14	1	4	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	a0003	764	14	0	2	0	0	12	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	a0004	764	4	4	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	a0005	764	1	1	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	a0006	764	1	1	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHZ1_chr18_75205797_75294944	1/0	a0001	1077	232	71	40	90	9	21	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/1	a0002	1077	69	7	19	27	6	9	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	a0003	1077	10	0	2	6	1	1	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	a0004	1077	3	0	0	0	0	3	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	a0005	1077	2	2	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	a0006	1077	2	0	0	2	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	a0007	1077	2	1	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	a0008	1077	2	2	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	a0009	1077	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	a0010	1077	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	a0011	1077	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	a0012	1077	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ2_chr20_52967358_53500330	0/0	a0001	1034	143	40	24	54	3	22	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	a0002	1034	15	15	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	a0003	1034	5	2	2	0	1	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	a0004	1034	3	3	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	a0005	1034	2	2	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	a0006	1034	2	0	0	0	0	2	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	a0007	1034	2	0	2	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	a0008	1034	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	a0009	1034	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ3_chr19_31269945_31354436	1/1	a0001	1081	325	85	53	135	10	40	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	a0002	1081	4	4	0	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	a0003	1081	3	0	3	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	a0004	1081	3	0	3	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	a0005	1081	2	0	0	0	0	2	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	a0006	1081	1	0	0	1	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	a0007	1081	1	0	0	1	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	a0008	1081	1	1	0	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	a0009	1081	1	0	1	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	a0010	1081	1	0	0	1	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSKS_chr19_49734760_49768306	1/1	a0001	592	340	63	68	153	14	40	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	a0002	586	32	8	2	19	0	3	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	a0003	586	12	8	0	3	0	1	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	a0004	586	9	5	2	2	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	a0005	586	9	7	2	0	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	a0006	592	5	0	1	0	1	3	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	a0007	592	3	0	0	3	0	0	copy fasta	TSKS	chr19	49734760	49768306