JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TSKS_chr19_49734760_49768306	0/0	a0008	586	3	3	0	0	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	a0009	592	1	0	0	0	1	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	a0010	592	1	0	0	1	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	a0011	417	1	0	0	1	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	a0012	592	1	0	0	0	0	1	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	a0013	592	1	0	1	0	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKU_chr11_76778356_76803144	0/1	a0001	353	309	76	48	148	11	25	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	1/0	a0002	353	66	1	20	23	7	14	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	a0003	353	22	2	0	20	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	a0004	353	19	14	5	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	a0005	353	3	0	0	3	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	a0006	353	2	2	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	a0007	353	2	2	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	a0008	353	2	2	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	a0009	353	2	0	0	0	0	2	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	a0010	353	1	0	1	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	a0011	353	1	0	0	0	0	1	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	a0012	353	1	1	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSLP_chr5_111066713_111083026	1/1	a0001	159	471	98	78	231	16	46	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	a0002	159	1	0	0	1	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSNARE1_chr8_142207080_142408182	1/0	a0001	513	69	8	19	22	5	14	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/1	a0002	513	67	34	15	11	1	5	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	a0003	513	38	1	8	25	0	4	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	a0004	513	15	7	3	2	0	3	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	a0005	513	14	10	0	3	1	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	a0006	513	10	5	1	3	0	1	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	a0007	513	9	1	4	4	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	a0008	513	8	0	0	8	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	a0009	513	2	1	0	1	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	a0010	513	1	0	0	1	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	a0011	511	1	1	0	0	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	a0012	513	1	0	0	0	0	1	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	a0013	513	1	0	0	0	1	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	a0014	513	1	1	0	0	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	a0015	511	1	1	0	0	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNAXIP1_chr16_67801889_67833068	1/1	a0001	712	244	86	42	78	4	32	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	a0002	712	5	0	4	0	1	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	a0003	712	2	2	0	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	a0004	712	1	0	1	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	a0005	511	1	0	0	0	1	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	a0006	712	1	1	0	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	a0007	712	1	1	0	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	a0008	712	1	0	1	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAX_chr1_231523669_231571524	1/1	a0001	290	391	90	60	175	18	46	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	a0002	102	1	0	0	1	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSN_chr2_121750651_121772853	1/1	a0001	228	390	94	66	176	14	38	copy fasta	TSN	chr2	121750651	121772853
TSPAN10_chr17_81632196_81653749	0/0	a0001	355	218	50	35	105	7	21	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	a0002	355	58	0	2	49	2	5	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/1	a0003	355	56	25	15	0	6	9	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	a0004	228	29	6	14	0	3	6	copy fasta	TSPAN10	chr17	81632196	81653749