JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TSPAN10_chr17_81632196_81653749	0/0	a0005	355	28	0	10	18	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	a0006	355	7	7	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	a0007	228	4	0	2	0	0	2	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	a0008	355	3	3	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	a0009	355	2	0	0	0	0	2	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	a0010	355	1	1	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	a0011	355	1	0	1	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	a0012	355	1	0	0	0	0	1	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	1/0	a0013	355	1	0	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	a0014	355	1	0	1	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN11_chr12_30921748_31001599	0/1	a0001	253	245	59	55	89	9	32	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	1/0	a0002	253	120	33	17	57	2	10	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	a0003	253	17	0	1	11	1	4	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	a0004	253	4	0	0	4	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	a0005	253	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	a0006	253	1	0	1	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	a0007	253	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	a0008	253	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	a0009	253	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	a0010	253	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	a0011	253	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	a0012	253	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN12_chr7_120782320_120863144	1/1	a0001	305	292	90	52	124	2	22	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	a0002	305	1	0	1	0	0	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	a0003	305	1	0	1	0	0	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN13_chr7_16748755_16789536	1/1	a0001	204	439	96	82	197	14	48	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	a0002	204	1	0	0	1	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN14_chr10_80449310_80527631	1/1	a0001	270	252	88	64	46	12	40	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN15_chr10_69446465_69512666	1/1	a0001	294	325	81	64	121	15	42	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	a0002	294	11	11	0	0	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	a0003	294	2	2	0	0	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	a0004	294	1	0	0	0	1	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	a0005	294	1	0	0	1	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN16_chr19_11291160_11320967	1/1	a0001	244	360	76	66	168	18	30	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	a0002	244	17	16	1	0	0	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	a0003	244	3	1	1	1	0	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	a0004	244	1	1	0	0	0	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	a0005	244	1	0	0	1	0	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN17_chr5_176642484_176664051	1/1	a0001	329	406	95	75	174	18	42	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	a0002	329	1	1	0	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	a0003	329	1	0	1	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	a0004	329	1	0	1	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	a0005	329	1	0	1	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN18_chr11_44721962_44937423	1/0	a0001	248	197	85	40	46	12	13	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	a0002	248	91	3	21	44	4	19	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	a0003	248	1	0	1	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/1	a0004	248	1	0	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN19_chr12_85009317_85041277	1/1	a0001	248	343	82	67	142	14	36	copy fasta	TSPAN19	chr12	85009317	85041277
TSPAN19_chr12_85009317_85041277	0/0	a0002	36	6	6	0	0	0	0	copy fasta	TSPAN19	chr12	85009317	85041277
TSPAN19_chr12_85009317_85041277	0/0	a0003	161	1	0	1	0	0	0	copy fasta	TSPAN19	chr12	85009317	85041277