JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TSPO2_chr6_41037467_41049337	0/0	a0002	170	1	0	1	0	0	0	copy fasta	TSPO2	chr6	41037467	41049337
TSPOAP1_chr17_58296231_58333795	1/1	a0001	1857	177	36	32	80	5	22	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0002	1857	33	0	1	24	4	4	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0003	1857	19	4	10	0	5	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0004	1857	18	1	6	11	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0005	1857	7	2	0	3	0	2	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0006	1857	5	0	3	0	1	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0007	1857	5	0	0	5	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0008	1857	4	4	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0009	1857	4	0	0	3	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0010	1857	4	4	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0011	1857	4	4	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0012	1857	4	0	0	0	1	3	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0013	1857	3	0	0	3	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0014	1857	3	3	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0015	1857	3	0	0	2	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0016	1857	3	0	0	3	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0017	1857	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0018	1857	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0019	1857	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0020	1857	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0021	1857	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0022	1857	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0023	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0024	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0025	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0026	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0027	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0028	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0029	1857	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0030	1857	1	0	0	0	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0031	1857	1	0	0	0	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0032	1857	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0033	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0034	1857	1	0	1	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0035	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0036	1857	1	0	0	0	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0037	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0038	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0039	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0040	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0041	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0042	1857	1	0	1	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0043	1857	1	0	1	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0044	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0045	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0046	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0047	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0048	1857	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0049	1857	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795