JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BOLA1_chr1_149894568_149905795	0/0	a0004	137	1	1	0	0	0	0	copy fasta	BOLA1	chr1	149894568	149905795
BOLA2B_chr16_30187932_30198666	0/0	a0001	86	254	62	50	104	14	24	copy fasta	BOLA2B	chr16	30187932	30198666
BOLA2_chr16_29448593_29459351	0/0	a0001	86	171	27	16	104	6	18	copy fasta	BOLA2	chr16	29448593	29459351
BOLA2_chr16_29448593_29459351	0/0	a0002	86	3	3	0	0	0	0	copy fasta	BOLA2	chr16	29448593	29459351
BOLA3_chr2_74130400_74152912	0/0	a0001	107	433	98	82	199	12	42	copy fasta	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	a0002	107	1	0	0	1	0	0	copy fasta	BOLA3	chr2	74130400	74152912
BOLL_chr2_197721890_197790319	1/1	a0001	283	321	72	65	149	10	23	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	a0002	283	5	4	1	0	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	a0003	283	1	0	0	0	0	1	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	a0004	283	1	0	0	1	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOP1_chr8_144257045_144296438	1/1	a0001	746	365	83	77	144	16	43	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0002	746	6	6	0	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0003	746	5	5	0	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0004	746	4	0	1	0	2	1	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0005	746	3	0	0	3	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0006	746	2	2	0	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0007	746	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0008	746	1	0	0	0	0	1	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0009	746	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0010	746	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0011	746	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0012	746	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0013	746	1	0	0	0	0	1	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0014	746	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0015	746	1	1	0	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0016	746	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0017	746	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0018	746	1	0	0	1	0	0	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	a0019	746	1	1	0	0	0	0	copy fasta	BOP1	chr8	144257045	144296438
BORA_chr13_72722923_72761196	1/1	a0001	559	379	92	61	166	17	41	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	a0002	559	4	1	1	0	1	1	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	a0003	559	2	2	0	0	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	a0004	559	1	1	0	0	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	a0005	559	1	0	0	1	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	a0006	559	1	0	0	1	0	0	copy fasta	BORA	chr13	72722923	72761196
BORCS6_chr17_8183345_8195180	1/1	a0001	357	410	89	77	182	16	44	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	a0002	357	2	0	0	2	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	a0003	357	1	0	0	1	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	a0004	357	1	0	1	0	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	a0005	357	1	1	0	0	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	a0006	357	1	0	0	1	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS7_chr10_102849259_102869961	1/1	a0001	106	454	94	78	216	16	48	copy fasta	BORCS7	chr10	102849259	102869961
BORCS8_chr19_19171906_19197152	1/1	a0001	119	410	86	77	183	16	46	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	a0002	119	15	14	1	0	0	0	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	a0003	119	3	0	0	3	0	0	copy fasta	BORCS8	chr19	19171906	19197152
BPGM_chr7_134641853_134684816	1/1	a0001	259	359	81	68	155	16	37	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	a0002	259	1	0	0	0	0	1	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	a0003	259	1	0	0	1	0	0	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	a0004	259	1	1	0	0	0	0	copy fasta	BPGM	chr7	134641853	134684816
BPHL_chr6_3113711_3158578	1/1	a0001	291	323	71	59	148	8	35	copy fasta	BPHL	chr6	3113711	3158578