JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TSPYL2_chrX_53077367_53093540	0/0	a0011	92	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0012	145	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0013	693	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0014	692	1	0	0	0	0	1	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0015	622	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0016	693	1	0	1	0	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0017	410	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL4_chr6_116244964_116259075	0/1	a0001	414	322	90	38	155	11	27	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	a0002	414	39	0	11	21	4	3	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	1/0	a0003	414	29	4	19	0	3	2	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	a0004	414	4	0	0	0	0	4	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	a0005	414	2	0	2	0	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	a0006	414	1	0	0	0	0	1	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	a0007	414	1	0	0	1	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	a0008	414	1	0	0	1	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	a0009	414	1	0	0	0	0	1	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL5_chr8_97268488_97282928	1/0	a0001	417	314	41	62	158	11	41	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/1	a0002	417	93	52	10	22	5	3	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	a0003	417	3	3	0	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	a0004	417	1	0	1	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	a0005	417	1	0	1	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL6_chr2_54248178_54261229	1/0	a0001	410	228	55	41	103	11	17	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0002	410	89	10	15	46	2	16	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/1	a0003	408	61	6	10	36	2	6	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0004	410	21	7	7	0	2	5	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0005	410	9	0	5	3	0	1	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0006	412	6	6	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0007	410	5	5	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0008	20	4	4	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0009	410	2	2	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0010	410	2	1	1	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0011	408	1	1	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0012	412	1	0	1	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0013	410	1	0	0	1	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0014	412	1	1	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0015	410	1	0	0	0	0	1	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0016	410	1	0	0	1	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0017	410	1	0	0	0	1	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0018	410	1	0	0	1	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	a0019	410	1	0	0	1	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSR1_chr17_2317396_2341457	1/1	a0001	804	277	86	57	85	11	36	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0002	804	96	2	8	80	2	4	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0003	804	16	3	0	8	1	4	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0004	804	4	4	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0005	804	3	1	2	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0006	804	2	0	0	2	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0007	804	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0008	804	1	0	0	0	0	1	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0009	804	1	0	1	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0010	498	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457