JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TSR1_chr17_2317396_2341457	0/0	a0011	804	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0012	804	1	0	1	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0013	804	1	0	1	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0014	804	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0015	804	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	a0016	804	1	0	0	0	0	1	copy fasta	TSR1	chr17	2317396	2341457
TSR2_chrX_54435404_54453032	1/1	a0001	191	295	74	52	130	11	26	copy fasta	TSR2	chrX	54435404	54453032
TSR3_chr16_1344240_1356878	1/1	a0001	312	352	83	68	138	18	43	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	a0002	312	3	0	0	3	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	a0003	312	3	3	0	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	a0004	312	2	2	0	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	a0005	307	1	1	0	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	a0006	312	1	0	0	1	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	a0007	312	1	0	0	0	0	1	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	a0008	312	1	1	0	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSSC4_chr11_2395750_2408876	0/1	a0001	329	323	25	71	158	18	50	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	a0002	329	58	34	4	20	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	a0003	329	30	28	2	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	a0004	329	5	5	0	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	a0005	329	5	0	0	5	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	a0006	329	5	0	0	5	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	a0007	329	3	0	3	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	a0008	329	2	2	0	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	1/0	a0009	329	2	0	1	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	a0010	329	1	0	1	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	a0011	329	1	1	0	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	a0012	329	1	1	0	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSK1B_chr5_113427553_113439989	1/1	a0001	367	326	70	53	147	13	41	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	a0002	367	24	17	6	0	1	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	a0003	367	17	0	7	10	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	a0004	367	3	0	0	3	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	a0005	367	1	1	0	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	a0006	367	1	0	0	0	0	1	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	a0007	367	1	0	0	1	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	a0008	367	1	0	0	1	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK2_chr22_19126308_19137622	1/0	a0001	358	314	64	59	144	13	33	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/1	a0002	358	101	23	17	40	5	15	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	a0003	358	15	9	0	6	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	a0004	358	8	0	0	8	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	a0005	358	1	0	0	1	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	a0006	358	1	0	0	1	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK3_chr1_32357539_32369312	1/1	a0001	268	290	90	52	98	12	36	copy fasta	TSSK3	chr1	32357539	32369312
TSSK3_chr1_32357539_32369312	0/0	a0002	268	2	2	0	0	0	0	copy fasta	TSSK3	chr1	32357539	32369312
TSSK4_chr14_24200696_24213248	1/1	a0001	338	413	79	74	200	16	42	copy fasta	TSSK4	chr14	24200696	24213248
TSSK4_chr14_24200696_24213248	0/0	a0002	337	9	9	0	0	0	0	copy fasta	TSSK4	chr14	24200696	24213248
TSSK4_chr14_24200696_24213248	0/0	a0003	298	2	0	2	0	0	0	copy fasta	TSSK4	chr14	24200696	24213248
TSSK4_chr14_24200696_24213248	0/0	a0004	338	2	2	0	0	0	0	copy fasta	TSSK4	chr14	24200696	24213248
TSSK4_chr14_24200696_24213248	0/0	a0005	338	1	0	0	0	0	1	copy fasta	TSSK4	chr14	24200696	24213248
TSSK4_chr14_24200696_24213248	0/0	a0006	338	1	0	0	0	0	1	copy fasta	TSSK4	chr14	24200696	24213248
TSSK6_chr19_19509219_19520548	1/1	a0001	273	380	94	62	158	16	48	copy fasta	TSSK6	chr19	19509219	19520548