JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TSSK6_chr19_19509219_19520548	0/0	a0002	273	5	0	0	5	0	0	copy fasta	TSSK6	chr19	19509219	19520548
TSSK6_chr19_19509219_19520548	0/0	a0003	273	1	0	0	1	0	0	copy fasta	TSSK6	chr19	19509219	19520548
TSTD1_chr1_161032631_161043964	1/1	a0001	115	387	81	67	176	18	43	copy fasta	TSTD1	chr1	161032631	161043964
TSTD1_chr1_161032631_161043964	0/0	a0002	115	2	2	0	0	0	0	copy fasta	TSTD1	chr1	161032631	161043964
TSTD1_chr1_161032631_161043964	0/0	a0003	115	1	0	1	0	0	0	copy fasta	TSTD1	chr1	161032631	161043964
TSTD1_chr1_161032631_161043964	0/0	a0004	115	1	1	0	0	0	0	copy fasta	TSTD1	chr1	161032631	161043964
TSTD1_chr1_161032631_161043964	0/0	a0005	115	1	0	0	0	0	1	copy fasta	TSTD1	chr1	161032631	161043964
TSTD2_chr9_97595080_97638368	0/0	a0001	516	228	71	46	81	9	21	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	1/1	a0002	516	70	6	11	45	3	3	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	a0003	516	69	9	6	36	2	16	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	a0004	516	3	3	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	a0005	516	2	0	1	1	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	a0006	516	1	1	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	a0007	516	1	0	0	1	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD3_chr6_99516049_99538185	1/1	a0001	97	434	88	84	196	16	48	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	a0002	97	2	0	0	2	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TST_chr22_37005865_37024447	1/1	a0001	297	415	77	80	198	18	40	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	a0002	297	15	15	0	0	0	0	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	a0003	297	3	3	0	0	0	0	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	a0004	297	1	0	0	1	0	0	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	a0005	297	1	1	0	0	0	0	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	a0006	297	1	0	0	1	0	0	copy fasta	TST	chr22	37005865	37024447
TTBK1_chr6_43238481_43293258	1/0	a0001	1321	119	21	25	53	4	15	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/1	a0002	1321	91	26	7	46	4	7	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0003	1320	35	3	7	18	0	7	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0004	1321	34	3	7	16	2	6	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0005	1321	17	15	0	2	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0006	1320	16	15	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0007	1320	10	0	7	1	0	2	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0008	1320	6	3	0	1	0	2	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0009	1320	6	4	1	0	0	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0010	1321	3	0	0	0	2	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0011	1321	2	1	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0012	1321	2	2	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0013	1320	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0014	1320	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0015	1321	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0016	1321	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0017	1321	1	0	0	0	0	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0018	1320	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	a0019	1321	1	0	0	1	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK2_chr15_42733730_42925778	0/0	a0001	1244	135	60	13	41	5	16	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	1/1	a0002	1244	69	7	12	39	3	6	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	a0003	1244	33	8	1	24	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	a0004	1244	6	0	0	5	0	1	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	a0005	1244	1	0	0	0	0	1	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	a0006	1244	1	0	0	1	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	a0007	1244	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	a0008	1244	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	a0009	1244	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778