JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTC12_chr11_113309583_113371387	1/1	a0001	705	227	69	32	90	8	26	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	a0002	705	102	9	25	46	4	18	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	a0003	705	3	0	2	0	0	1	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	a0004	705	3	0	0	3	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	a0005	705	2	2	0	0	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	a0006	705	1	0	0	0	0	1	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	a0007	705	1	0	1	0	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	a0008	705	1	0	0	1	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	a0009	705	1	1	0	0	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	a0010	705	1	1	0	0	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	a0011	705	1	0	0	1	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	a0012	705	1	0	0	1	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC13_chr1_230901243_230983861	1/1	a0001	860	247	75	41	92	12	25	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	a0002	860	78	11	7	46	2	12	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	a0003	860	3	0	0	0	2	1	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	a0004	860	2	0	1	0	0	1	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	a0005	860	1	1	0	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	a0006	860	1	0	1	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	a0007	860	1	0	0	1	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	a0008	860	1	1	0	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	a0009	860	1	0	0	1	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	a0010	860	1	0	0	0	0	1	copy fasta	TTC13	chr1	230901243	230983861
TTC14_chr3_180597163_180616130	1/1	a0001	770	321	89	68	116	14	32	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	a0002	770	6	0	0	6	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	a0003	770	4	4	0	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	a0004	770	1	1	0	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	a0005	770	1	1	0	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	a0006	770	1	1	0	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC16_chr9_127711079_127736590	1/0	a0001	873	201	57	39	76	5	23	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/1	a0002	873	77	7	20	25	5	19	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0003	873	9	7	2	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0004	873	9	9	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0005	873	7	0	6	1	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0006	873	5	0	0	5	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0007	873	5	5	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0008	873	3	0	0	3	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0009	873	2	2	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0010	873	2	0	2	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0011	143	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0012	873	1	0	1	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0013	873	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0014	873	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0015	873	1	0	1	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0016	873	1	0	0	0	0	1	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0017	873	1	0	0	0	0	1	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0018	873	1	0	0	0	0	1	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0019	873	1	0	0	0	0	1	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0020	873	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0021	873	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0022	873	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590