JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BPHL_chr6_3113711_3158578	0/0	a0002	291	16	16	0	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	a0003	291	6	1	0	2	0	3	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	a0004	291	4	3	1	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	a0005	291	1	1	0	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPIFA1_chr20_33230996_33248306	1/1	a0001	256	382	96	72	164	12	36	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA2_chr20_33163159_33186412	1/1	a0001	249	326	53	69	151	14	37	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	a0002	249	29	28	1	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	a0003	2	9	9	0	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	a0004	249	5	0	0	5	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	a0005	249	3	3	0	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	a0006	249	2	0	2	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	a0007	232	2	0	0	0	0	2	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	a0008	249	1	1	0	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	a0009	249	1	0	0	0	0	1	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA3_chr20_33212352_33232806	0/1	a0001	254	259	63	30	135	6	24	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	1/0	a0002	254	130	23	40	37	10	19	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	a0003	254	6	0	0	6	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	a0004	254	5	5	0	0	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	a0005	254	4	0	0	4	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	a0006	254	3	2	0	1	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	a0007	108	2	1	1	0	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	a0008	55	1	0	0	1	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	a0009	254	1	0	0	1	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	a0010	254	1	0	1	0	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	a0011	254	1	0	0	1	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	a0012	254	1	1	0	0	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	a0013	254	1	0	0	0	0	1	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	a0014	254	1	1	0	0	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFB1_chr20_33278214_33314871	0/0	a0001	484	121	11	22	67	4	17	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0002	484	94	22	25	42	1	4	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	1/1	a0003	484	73	3	22	25	7	14	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0004	484	37	13	5	14	1	4	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0005	484	10	9	1	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0006	484	8	8	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0007	484	8	8	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0008	484	8	8	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0009	484	5	5	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0010	484	4	0	2	0	1	1	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0011	484	3	3	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0012	484	3	0	0	0	2	1	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0013	484	2	0	0	2	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0014	484	2	1	1	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0015	484	2	2	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0016	484	1	0	1	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0017	484	1	1	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0018	484	1	1	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0019	484	1	1	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0020	484	1	0	0	0	0	1	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0021	484	1	1	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	a0022	484	1	1	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871