JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTC6_chr14_37590629_37847717	0/0	a0012	1886	2	2	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0013	1886	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0014	1886	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0015	1886	1	0	0	0	1	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0016	1886	1	0	0	0	0	1	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0017	1886	1	0	0	0	1	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0018	1886	1	0	0	0	0	1	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0019	1886	1	0	1	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0020	1886	1	0	0	1	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0021	1886	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0022	1886	1	0	1	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0023	1886	1	0	0	0	0	1	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0024	1886	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0025	1886	1	0	0	1	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0026	1886	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0027	1886	1	0	0	1	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0028	1886	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0029	1409	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0030	1886	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0031	1886	1	0	0	0	0	1	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0032	1886	1	0	1	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC7A_chr2_46936224_47081123	1/1	a0001	858	194	63	46	46	10	27	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0002	858	84	18	10	50	2	4	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0003	858	9	0	0	8	0	1	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0004	858	3	3	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0005	858	3	0	0	3	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0006	858	3	0	0	2	0	1	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0007	858	2	0	0	2	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0008	858	2	0	0	2	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0009	858	2	0	0	2	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0010	858	1	0	1	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0011	858	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0012	858	1	0	0	0	0	1	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0013	858	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0014	858	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0015	858	1	0	1	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0016	858	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0017	858	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0018	858	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0019	858	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0020	858	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	a0021	858	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7B_chr14_90519564_90821430	1/1	a0001	843	198	64	30	72	6	24	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	a0002	843	1	0	1	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	a0003	843	1	0	1	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC8_chr14_88819651_88882988	1/1	a0001	515	396	93	70	176	14	41	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	a0002	515	1	0	0	1	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	a0003	515	1	0	0	1	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	a0004	515	1	0	0	0	0	1	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	a0005	515	1	1	0	0	0	0	copy fasta	TTC8	chr14	88819651	88882988