JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTC9B_chr19_40211058_40223384	1/1	a0001	239	416	97	74	181	18	44	copy fasta	TTC9B	chr19	40211058	40223384
TTC9B_chr19_40211058_40223384	0/0	a0002	239	1	0	0	1	0	0	copy fasta	TTC9B	chr19	40211058	40223384
TTC9B_chr19_40211058_40223384	0/0	a0003	239	1	1	0	0	0	0	copy fasta	TTC9B	chr19	40211058	40223384
TTC9C_chr11_62723486_62743636	1/1	a0001	171	366	88	64	167	8	37	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	a0002	171	1	0	0	0	0	1	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	a0003	171	1	0	0	1	0	0	copy fasta	TTC9C	chr11	62723486	62743636
TTC9_chr14_70636916_70680366	0/1	a0001	222	324	77	58	143	15	30	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	1/0	a0002	222	66	14	12	26	1	12	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	a0003	222	47	5	2	37	0	3	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	a0004	222	8	1	0	6	0	1	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	a0005	222	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTF1_chr9_132370548_132411840	1/1	a0001	905	215	64	37	77	11	24	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0002	905	66	6	6	48	2	4	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0003	905	52	0	4	45	0	3	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0004	905	32	5	7	12	2	6	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0005	905	16	1	2	8	1	4	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0006	905	6	6	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0007	905	3	3	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0008	905	2	1	1	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0009	905	2	0	0	0	0	2	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0010	901	1	1	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0011	905	1	0	0	0	0	1	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0012	869	1	0	0	1	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0013	905	1	1	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0014	905	1	0	0	1	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	a0015	905	1	0	1	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF2_chr1_117055326_117112453	1/0	a0001	1162	153	58	26	45	6	17	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0002	1162	137	12	45	60	7	13	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0003	1162	9	9	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0004	1162	5	5	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0005	1162	3	3	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0006	1162	3	3	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0007	1162	2	2	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0008	1162	2	0	0	0	1	1	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0009	1162	2	2	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0010	1162	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0011	1162	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0012	1162	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/1	a0013	1162	1	0	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0014	1162	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0015	1162	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0016	1162	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0017	1162	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0018	1162	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0019	1162	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0020	1162	1	0	0	0	0	1	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	a0021	1162	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTI1_chr20_37978021_38038456	1/1	a0001	1089	381	90	65	173	12	39	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	a0002	1089	2	2	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	a0003	1089	2	0	0	1	0	1	copy fasta	TTI1	chr20	37978021	38038456